Variant report

Variant	rs12884911
Chromosome Location	chr14:65027871-65027872
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:65026787..65029450-chr14:65030177..65032001,2	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10782452	0.85[EUR][1000 genomes]
rs10873174	1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];0.91[TSI][hapmap];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11622168	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.91[TSI][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11622941	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12323845	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12435904	0.91[CHB][hapmap]
rs12436296	0.86[CHB][hapmap]
rs13329053	0.83[TSI][hapmap]
rs17113846	0.82[CHB][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1742159	0.80[EUR][1000 genomes]
rs17824845	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1950302	0.91[CHB][hapmap]
rs1956419	0.91[CHB][hapmap]
rs2038271	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3742604	1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4902291	0.84[EUR][1000 genomes]
rs4902293	1.00[CHB][hapmap];0.98[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6573560	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.89[TSI][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66939314	0.96[ASN][1000 genomes]
rs7143298	0.91[CHB][hapmap]
rs7152440	0.80[EUR][1000 genomes]
rs9944101	0.95[CHB][hapmap];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049097	chr14:65027753-65202018	Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs12884911	ZBTB25	cis	multi-tissue	Pritchard
rs12884911	ZBTB25	Cis_1M	lymphoblastoid	RTeQTL
rs12884911	SIX1	cis	cerebellum	SCAN
rs12884911	ARG2	cis	parietal	SCAN
rs12884911	ZBTB25	cis	cerebellum	SCAN
rs12884911	ZBTB1	cis	cerebellum	SCAN

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65021400-65033400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr14:65021600-65047600	Weak transcription	Pancreas	Pancrea
3	chr14:65023400-65033400	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr14:65023800-65028800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr14:65025000-65030200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr14:65027600-65028800	Enhancers	Hela-S3	cervix
7	chr14:65027800-65028000	Enhancers	Psoas Muscle	Psoas
8	chr14:65027800-65028200	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr14:65027800-65028200	Enhancers	Primary T helper naive cells from peripheral blood	blood
10	chr14:65027800-65028200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
11	chr14:65027800-65028200	Enhancers	Primary T killer memory cells from peripheral blood	blood
12	chr14:65027800-65028200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr14:65027800-65028200	Enhancers	A549	lung
14	chr14:65027800-65028400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr14:65027800-65028400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr14:65027800-65028600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr14:65027800-65030600	Enhancers	Skeletal Muscle Male	skeletal muscle

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