Variant report

Variant	rs12436296
Chromosome Location	chr14:65095844-65095845
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:65005880..65009411-chr14:65095614..65097632,3	MCF-7	breast:
2	chr14:64970085..64973527-chr14:65095714..65099438,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000089775	Chromatin interaction
ENSG00000126804	Chromatin interaction
ENSG00000126803	Chromatin interaction
ENSG00000259116	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10782452	0.85[ASN][1000 genomes]
rs10873174	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs11158554	0.82[ASN][1000 genomes]
rs11158555	0.82[ASN][1000 genomes]
rs11622168	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs11848238	0.81[ASN][1000 genomes]
rs12431555	0.82[ASN][1000 genomes]
rs12432551	0.82[ASN][1000 genomes]
rs12435904	0.95[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs12884911	0.86[CHB][hapmap]
rs12893758	0.83[ASN][1000 genomes]
rs17113846	0.86[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs17824845	0.88[ASN][1000 genomes]
rs1950302	0.95[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs1956419	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs1956420	0.84[ASN][1000 genomes]
rs3742604	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs4902293	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs4902303	0.95[ASN][1000 genomes]
rs6573560	0.86[CHB][hapmap]
rs7143298	0.91[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs733127	0.84[ASN][1000 genomes]
rs9944101	0.91[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049097	chr14:65027753-65202018	Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65092600-65099000	Weak transcription	Spleen	Spleen
2	chr14:65092600-65103000	Weak transcription	Fetal Muscle Leg	muscle
3	chr14:65092800-65097600	Enhancers	Colon Smooth Muscle	Colon
4	chr14:65092800-65099000	Weak transcription	Colonic Mucosa	Colon
5	chr14:65092800-65100000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr14:65093000-65103000	Weak transcription	Fetal Intestine Small	intestine
7	chr14:65093200-65098200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr14:65094800-65096000	Enhancers	NHLF	lung
9	chr14:65094800-65096200	Enhancers	NHDF-Ad	bronchial
10	chr14:65094800-65097600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr14:65095000-65096000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr14:65095000-65096000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr14:65095000-65096000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr14:65095000-65096200	Flanking Active TSS	A549	lung
15	chr14:65095000-65096800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr14:65095200-65096000	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr14:65095200-65096000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr14:65095200-65096000	Enhancers	Hela-S3	cervix
19	chr14:65095200-65096000	Enhancers	HSMM	muscle
20	chr14:65095200-65096200	Enhancers	Fetal Stomach	stomach
21	chr14:65095200-65096200	Enhancers	HSMMtube	muscle
22	chr14:65095200-65096400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr14:65095200-65096400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr14:65095200-65096400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr14:65095200-65096400	Enhancers	HMEC	breast
26	chr14:65095200-65096600	Enhancers	NHEK	skin
27	chr14:65095200-65096600	Enhancers	Osteobl	bone
28	chr14:65095200-65096800	Enhancers	Muscle Satellite Cultured Cells	--
29	chr14:65095400-65096000	Enhancers	HUES6 Cell Line	embryonic stem cell
30	chr14:65095400-65096000	Enhancers	HUES64 Cell Line	embryonic stem cell
31	chr14:65095400-65096000	Enhancers	Brain Substantia Nigra	brain
32	chr14:65095400-65096000	Enhancers	Fetal Lung	lung
33	chr14:65095400-65096000	Enhancers	Placenta Amnion	Placenta Amnion
34	chr14:65095400-65096200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr14:65095400-65096200	Enhancers	Brain Angular Gyrus	brain
36	chr14:65095400-65096200	Enhancers	Brain Cingulate Gyrus	brain
37	chr14:65095400-65096200	Enhancers	Brain Hippocampus Middle	brain
38	chr14:65095400-65096200	Enhancers	Brain Inferior Temporal Lobe	brain
39	chr14:65095400-65097600	Enhancers	Rectal Smooth Muscle	rectum
40	chr14:65095600-65096000	Enhancers	H1 Cell Line	embryonic stem cell
41	chr14:65095600-65096000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr14:65095600-65096000	Enhancers	HUES48 Cell Line	embryonic stem cell
43	chr14:65095600-65096000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
44	chr14:65095600-65096000	Enhancers	Rectal Mucosa Donor 31	rectum
45	chr14:65095600-65096200	Enhancers	iPS-15b Cell Line	embryonic stem cell
46	chr14:65095600-65096200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr14:65095600-65096400	Enhancers	Stomach Smooth Muscle	stomach
48	chr14:65095600-65098000	Weak transcription	Fetal Intestine Large	intestine
49	chr14:65095800-65097000	Weak transcription	Duodenum Smooth Muscle	Duodenum
50	chr14:65095800-65097000	Weak transcription	Rectal Mucosa Donor 29	rectum

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