Variant report

Variant	rs733127
Chromosome Location	chr14:65129963-65129964
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:65128219..65131005-chr14:65132581..65134716,2	MCF-7	breast:
2	chr14:65121948..65123867-chr14:65127242..65130196,2	MCF-7	breast:
3	chr14:65128230..65131121-chr14:65136317..65138576,2	K562	blood:
4	chr14:64970962..64972847-chr14:65127879..65130475,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000126804	Chromatin interaction
ENSG00000089775	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11158554	0.93[ASN][1000 genomes]
rs11158555	0.93[ASN][1000 genomes]
rs11848238	0.94[ASN][1000 genomes]
rs12431555	0.93[ASN][1000 genomes]
rs12432551	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12435904	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12436296	0.84[ASN][1000 genomes]
rs12893758	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17113846	0.81[ASN][1000 genomes]
rs1950302	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1956419	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1956420	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2016351	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4899141	0.81[ASN][1000 genomes]
rs4902303	0.82[ASN][1000 genomes]
rs7142258	0.81[ASN][1000 genomes]
rs7143298	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs911000	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049097	chr14:65027753-65202018	Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65127600-65139800	Weak transcription	Esophagus	oesophagus
2	chr14:65128400-65130800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr14:65128400-65131400	Enhancers	HSMM	muscle
4	chr14:65128600-65130000	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr14:65128600-65132000	Weak transcription	Osteobl	bone
6	chr14:65128600-65133200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr14:65128800-65130000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr14:65129400-65130400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr14:65129400-65130400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr14:65129400-65130600	Enhancers	Fetal Intestine Large	intestine
11	chr14:65129600-65130400	Enhancers	Muscle Satellite Cultured Cells	--
12	chr14:65129600-65130400	Enhancers	Fetal Intestine Small	intestine
13	chr14:65129600-65130400	Enhancers	Fetal Muscle Leg	muscle
14	chr14:65129600-65130400	Enhancers	HMEC	breast
15	chr14:65129600-65130400	Enhancers	HSMMtube	muscle
16	chr14:65129600-65131400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr14:65129800-65130000	Enhancers	Duodenum Mucosa	Duodenum
18	chr14:65129800-65130200	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr14:65129800-65130200	Weak transcription	Fetal Muscle Trunk	muscle
20	chr14:65129800-65130200	Enhancers	A549	lung
21	chr14:65129800-65130400	Enhancers	ES-I3 Cell Line	embryonic stem cell
22	chr14:65129800-65130400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
23	chr14:65129800-65130400	Enhancers	Fetal Kidney	kidney
24	chr14:65129800-65130400	Enhancers	HepG2	liver
25	chr14:65129800-65130600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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