Variant report

Variant	rs7142258
Chromosome Location	chr14:65132900-65132901
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11158554	0.84[ASN][1000 genomes]
rs11158555	0.84[ASN][1000 genomes]
rs11848238	0.86[ASN][1000 genomes]
rs12431555	0.84[ASN][1000 genomes]
rs12432551	0.83[ASN][1000 genomes]
rs12435904	0.80[ASN][1000 genomes]
rs12893758	0.80[ASN][1000 genomes]
rs12894022	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1950302	0.80[ASN][1000 genomes]
rs1956418	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1956420	0.81[ASN][1000 genomes]
rs2016351	0.92[ASN][1000 genomes]
rs4899141	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs733127	0.81[ASN][1000 genomes]
rs8007886	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs8015571	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs910998	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs911000	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049097	chr14:65027753-65202018	Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65127600-65139800	Weak transcription	Esophagus	oesophagus
2	chr14:65128600-65133200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr14:65130200-65135800	Weak transcription	A549	lung
4	chr14:65130400-65133400	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr14:65130400-65133400	Weak transcription	Duodenum Mucosa	Duodenum
6	chr14:65130400-65138600	Weak transcription	HMEC	breast
7	chr14:65130400-65139800	Weak transcription	Fetal Muscle Leg	muscle
8	chr14:65130600-65139600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr14:65131400-65133600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr14:65132200-65133400	Weak transcription	Osteobl	bone

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links