Variant report

Variant	rs12432551
Chromosome Location	chr14:65133601-65133602
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:65128219..65131005-chr14:65132581..65134716,2	MCF-7	breast:
2	chr14:65127112..65129777-chr14:65132190..65134569,2	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10873174	0.90[CHB][hapmap]
rs11158554	0.91[ASN][1000 genomes]
rs11158555	0.91[ASN][1000 genomes]
rs11622168	0.91[CHB][hapmap]
rs11848238	0.93[ASN][1000 genomes]
rs12431555	0.91[ASN][1000 genomes]
rs12435904	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12436296	0.90[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs12884911	0.91[CHB][hapmap]
rs12893758	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17113846	0.95[JPT][hapmap]
rs1950302	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1956419	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1956420	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2016351	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs3742604	0.91[CHB][hapmap]
rs4899141	0.83[ASN][1000 genomes]
rs4902293	0.91[CHB][hapmap]
rs4902303	0.80[ASN][1000 genomes]
rs6573560	0.91[CHB][hapmap]
rs7142258	0.83[ASN][1000 genomes]
rs7143298	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs733127	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8007886	0.82[ASN][1000 genomes]
rs910998	0.82[ASN][1000 genomes]
rs911000	0.83[ASN][1000 genomes]
rs9944101	0.91[CHB][hapmap];0.95[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049097	chr14:65027753-65202018	Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65127600-65139800	Weak transcription	Esophagus	oesophagus
2	chr14:65130200-65135800	Weak transcription	A549	lung
3	chr14:65130400-65138600	Weak transcription	HMEC	breast
4	chr14:65130400-65139800	Weak transcription	Fetal Muscle Leg	muscle
5	chr14:65130600-65139600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr14:65133200-65133800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr14:65133400-65134000	Enhancers	Duodenum Mucosa	Duodenum
8	chr14:65133400-65139800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr14:65133600-65133800	Enhancers	Muscle Satellite Cultured Cells	--
10	chr14:65133600-65133800	Enhancers	Osteobl	bone
11	chr14:65133600-65134000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr14:65133600-65134000	Enhancers	Stomach Mucosa	stomach

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