Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:20564625..20568805-chr2:20571129..20576493,6	MCF-7	breast:
2	chr2:20568048..20570618-chr2:20572813..20574858,3	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1043419	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs11096656	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs11096657	0.92[ASN][1000 genomes]
rs2160071	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs343162	0.84[AMR][1000 genomes]
rs4465730	0.92[ASN][1000 genomes]
rs4666300	0.92[ASN][1000 genomes]
rs4666379	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs4666384	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4666385	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56116608	0.85[ASN][1000 genomes]
rs62124605	1.00[ASN][1000 genomes]
rs62124607	0.92[ASN][1000 genomes]
rs6531227	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs6531228	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs6531230	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs6531234	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6706872	0.83[CEU][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs6741559	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs719148	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7596183	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7606633	0.92[ASN][1000 genomes]
rs989982	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873716	chr2:20572094-20621404	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:20565200-20578400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:20565800-20575200	Weak transcription	NH-A	brain
3	chr2:20569600-20574200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr2:20570200-20574800	Weak transcription	Placenta	Placenta
5	chr2:20570200-20578600	Weak transcription	Ovary	ovary
6	chr2:20571600-20575000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr2:20571800-20576600	Weak transcription	Fetal Lung	lung
8	chr2:20572800-20578400	Weak transcription	Fetal Brain Male	brain
9	chr2:20573000-20573200	Enhancers	A549	lung

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