Variant report

No.	Distal block	Cell Line	Cell type
1	chr2:20569349..20572195-chr2:20573816..20575777,2	MCF-7	breast:
2	chr2:20564625..20568805-chr2:20571129..20576493,6	MCF-7	breast:
3	chr2:20574805..20576897-chr2:20646871..20649398,2	MCF-7	breast:
4	chr2:20573304..20576530-chr2:20577907..20583085,5	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1043419	0.88[ASN][1000 genomes]
rs11096656	0.88[ASN][1000 genomes]
rs11096657	0.88[ASN][1000 genomes]
rs2058553	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2160071	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs343162	0.83[AMR][1000 genomes]
rs4465730	0.88[ASN][1000 genomes]
rs4666300	0.88[ASN][1000 genomes]
rs4666379	0.88[ASN][1000 genomes]
rs4666384	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56116608	0.88[ASN][1000 genomes]
rs62124605	0.96[ASN][1000 genomes]
rs62124607	0.96[ASN][1000 genomes]
rs6531227	0.88[ASN][1000 genomes]
rs6531228	0.88[ASN][1000 genomes]
rs6531230	0.88[ASN][1000 genomes]
rs6531234	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6706872	0.88[ASN][1000 genomes]
rs6741559	0.88[ASN][1000 genomes]
rs719148	0.88[ASN][1000 genomes]
rs7596183	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7606633	0.88[ASN][1000 genomes]
rs989982	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873716	chr2:20572094-20621404	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:20565200-20578400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:20570200-20578600	Weak transcription	Ovary	ovary
3	chr2:20571800-20576600	Weak transcription	Fetal Lung	lung
4	chr2:20572800-20578400	Weak transcription	Fetal Brain Male	brain
5	chr2:20574800-20575400	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr2:20574800-20575400	Enhancers	Placenta	Placenta
7	chr2:20575000-20578600	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr2:20575200-20575400	Bivalent Enhancer	HepG2	liver
9	chr2:20575200-20575800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr2:20575200-20576800	Weak transcription	Aorta	Aorta
11	chr2:20575200-20578600	Weak transcription	HUES6 Cell Line	embryonic stem cell

Quick Search: