Variant report

No.	Distal block	Cell Line	Cell type
1	chr2:20569349..20572195-chr2:20573816..20575777,2	MCF-7	breast:
2	chr2:20564625..20568805-chr2:20571129..20576493,6	MCF-7	breast:
3	chr2:20574805..20576897-chr2:20646871..20649398,2	MCF-7	breast:
4	chr2:20573304..20576530-chr2:20577907..20583085,5	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1043419	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs11096656	0.83[CEU][hapmap];1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs11096657	0.85[ASN][1000 genomes]
rs2058553	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2160071	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs343162	0.81[AMR][1000 genomes]
rs4465730	0.85[ASN][1000 genomes]
rs4666300	0.85[ASN][1000 genomes]
rs4666379	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs4666385	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56116608	0.85[ASN][1000 genomes]
rs62124605	0.92[ASN][1000 genomes]
rs62124607	0.92[ASN][1000 genomes]
rs6531227	0.83[CEU][hapmap];1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs6531228	0.83[CEU][hapmap];1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs6531230	0.83[CEU][hapmap];1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs6531234	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6706872	0.83[CEU][hapmap];0.85[ASN][1000 genomes]
rs6741559	0.83[CEU][hapmap];1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs719148	0.83[CEU][hapmap];1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs7596183	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7606633	0.85[ASN][1000 genomes]
rs989982	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873716	chr2:20572094-20621404	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:20565200-20578400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:20565800-20575200	Weak transcription	NH-A	brain
3	chr2:20570200-20578600	Weak transcription	Ovary	ovary
4	chr2:20571800-20576600	Weak transcription	Fetal Lung	lung
5	chr2:20572800-20578400	Weak transcription	Fetal Brain Male	brain
6	chr2:20574400-20575200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr2:20574600-20575200	Flanking Bivalent TSS/Enh	HepG2	liver
8	chr2:20574800-20575200	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr2:20574800-20575400	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr2:20574800-20575400	Enhancers	Placenta	Placenta
11	chr2:20575000-20578600	Weak transcription	HUES64 Cell Line	embryonic stem cell

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