Variant report

Variant	rs2068955
Chromosome Location	chr9:117504798-117504799
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10733612	0.93[ASN][1000 genomes]
rs10739427	0.89[ASN][1000 genomes]
rs10759734	0.89[ASN][1000 genomes]
rs10817673	0.90[ASN][1000 genomes]
rs10982399	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4133032	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7038398	0.94[ASN][1000 genomes]
rs7854152	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893766	chr9:117385992-117516418	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117498400-117508200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:117501600-117505600	Weak transcription	Liver	Liver
3	chr9:117501600-117505800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr9:117501600-117506800	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr9:117501600-117507600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr9:117501600-117508000	Weak transcription	NHLF	lung
7	chr9:117501800-117505600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr9:117501800-117505600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr9:117501800-117506600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr9:117501800-117507000	Weak transcription	HUVEC	blood vessel
11	chr9:117501800-117507200	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr9:117501800-117507400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr9:117501800-117507400	Weak transcription	Hela-S3	cervix
14	chr9:117504200-117507800	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr9:117504600-117506000	Enhancers	Gastric	stomach
16	chr9:117504600-117506000	Enhancers	A549	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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