Variant report

Variant	rs10817673
Chromosome Location	chr9:117497193-117497194
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:117497188..117498694-chr9:117669038..117671472,2	MCF-7	breast:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10733612	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10739427	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10759734	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10759735	0.92[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs10817670	0.90[EUR][1000 genomes]
rs10817672	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10982399	0.89[ASN][1000 genomes]
rs12335468	0.81[ASN][1000 genomes]
rs12348862	0.81[ASN][1000 genomes]
rs2068955	0.90[ASN][1000 genomes]
rs4978609	0.81[ASN][1000 genomes]
rs7038398	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7849556	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7854152	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831694	chr9:117328640-117502785	Flanking Active TSS Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv893766	chr9:117385992-117516418	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117487000-117498000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr9:117494200-117497200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr9:117494400-117497200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr9:117494800-117499800	Weak transcription	Right Atrium	heart
5	chr9:117495200-117497200	Weak transcription	Duodenum Mucosa	Duodenum
6	chr9:117495200-117497200	Enhancers	NHEK	skin
7	chr9:117495200-117497400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr9:117495200-117497800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr9:117495200-117497800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr9:117495200-117497800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr9:117495200-117501000	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr9:117495200-117501400	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr9:117495400-117497200	Weak transcription	NHDF-Ad	bronchial
14	chr9:117495400-117497800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr9:117495400-117498000	Weak transcription	HSMM	muscle
16	chr9:117495400-117498000	Weak transcription	Osteobl	bone
17	chr9:117495400-117499600	Enhancers	Hela-S3	cervix
18	chr9:117495400-117501000	Weak transcription	HSMMtube	muscle
19	chr9:117496000-117498000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr9:117496600-117497800	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr9:117496600-117497800	Weak transcription	A549	lung
22	chr9:117496800-117498000	Weak transcription	HMEC	breast
23	chr9:117497000-117497200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
24	chr9:117497000-117497400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr9:117497000-117501600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood

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