Variant report

Variant	rs7849556
Chromosome Location	chr9:117482672-117482673
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10733612	0.82[EUR][1000 genomes]
rs10739427	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10759734	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10817669	1.00[ASN][1000 genomes]
rs10817673	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17237455	0.98[ASN][1000 genomes]
rs7038398	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831694	chr9:117328640-117502785	Flanking Active TSS Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv893766	chr9:117385992-117516418	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1042718	chr9:117435306-117488969	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117477800-117483000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
2	chr9:117479000-117484200	Enhancers	Primary T cells fromperipheralblood	blood
3	chr9:117479600-117482800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr9:117480200-117485000	Enhancers	HMEC	breast
5	chr9:117480400-117483600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr9:117480400-117484400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr9:117480400-117485000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr9:117480600-117484800	Enhancers	NHEK	skin
9	chr9:117481000-117484400	Enhancers	Esophagus	oesophagus
10	chr9:117481200-117484200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr9:117481200-117486000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr9:117481400-117488800	Enhancers	NHDF-Ad	bronchial
13	chr9:117481600-117485600	Weak transcription	NH-A	brain
14	chr9:117481800-117482800	Enhancers	Primary T helper cells PMA-I stimulated	--
15	chr9:117481800-117483200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
16	chr9:117481800-117483600	Enhancers	HepG2	liver
17	chr9:117481800-117483800	Enhancers	Hela-S3	cervix
18	chr9:117482000-117484400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
19	chr9:117482200-117483400	Enhancers	Fetal Muscle Leg	muscle
20	chr9:117482200-117484000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr9:117482400-117483200	Enhancers	HSMMtube	muscle
22	chr9:117482400-117484400	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr9:117482400-117484400	Enhancers	Fetal Muscle Trunk	muscle
24	chr9:117482600-117482800	Bivalent Enhancer	Muscle Satellite Cultured Cells	--
25	chr9:117482600-117483200	Enhancers	NHLF	lung
26	chr9:117482600-117483800	Enhancers	Placenta Amnion	Placenta Amnion
27	chr9:117482600-117487000	Enhancers	Osteobl	bone

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