Variant report

Variant	rs10739427
Chromosome Location	chr9:117496335-117496336
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10733612	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10759734	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10759735	0.92[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs10817670	0.90[EUR][1000 genomes]
rs10817672	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10817673	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10982399	0.87[ASN][1000 genomes]
rs12335468	0.82[ASN][1000 genomes]
rs12348862	0.82[ASN][1000 genomes]
rs2068955	0.89[ASN][1000 genomes]
rs4978609	0.82[ASN][1000 genomes]
rs7038398	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7849556	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7854152	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831694	chr9:117328640-117502785	Flanking Active TSS Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv893766	chr9:117385992-117516418	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117487000-117498000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr9:117494000-117496800	Enhancers	HMEC	breast
3	chr9:117494200-117497200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr9:117494400-117497200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr9:117494800-117499800	Weak transcription	Right Atrium	heart
6	chr9:117495200-117497200	Weak transcription	Duodenum Mucosa	Duodenum
7	chr9:117495200-117497200	Enhancers	NHEK	skin
8	chr9:117495200-117497400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr9:117495200-117497800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr9:117495200-117497800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr9:117495200-117497800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr9:117495200-117501000	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr9:117495200-117501400	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr9:117495400-117496400	Weak transcription	NH-A	brain
15	chr9:117495400-117497200	Weak transcription	NHDF-Ad	bronchial
16	chr9:117495400-117497800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr9:117495400-117498000	Weak transcription	HSMM	muscle
18	chr9:117495400-117498000	Weak transcription	Osteobl	bone
19	chr9:117495400-117499600	Enhancers	Hela-S3	cervix
20	chr9:117495400-117501000	Weak transcription	HSMMtube	muscle
21	chr9:117496000-117496600	Enhancers	A549	lung
22	chr9:117496000-117498000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr9:117496200-117496600	Enhancers	Muscle Satellite Cultured Cells	--

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