Variant report

Variant	rs2071809
Chromosome Location	chr6:36463627-36463628
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:36462201..36467038-chr6:36561436..36566135,7	K562	blood:
2	chr6:36455769..36458609-chr6:36460357..36464482,4	MCF-7	breast:
3	chr6:36461435..36463724-chr6:36489675..36491794,2	MCF-7	breast:
4	chr6:36462622..36466969-chr6:36560002..36564698,6	K562	blood:

Variant related genes	Relation type
ENSG00000239964	Chromatin interaction
ENSG00000112081	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs2187810	0.81[CHD][hapmap]
rs3176321	1.00[ASW][hapmap]
rs3798480	0.85[CHB][hapmap]
rs4295471	0.83[CHB][hapmap]
rs6906885	0.84[CHB][hapmap];0.82[CHD][hapmap]
rs6919571	0.85[CHB][hapmap];0.83[CHD][hapmap]
rs7771459	0.85[CHB][hapmap]
rs9296180	0.85[CHB][hapmap];0.83[CHD][hapmap]
rs9296181	0.85[CHB][hapmap]
rs9368931	0.85[CHB][hapmap]
rs9368936	1.00[CHB][hapmap];0.89[JPT][hapmap];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9394349	0.85[CHB][hapmap]
rs9394350	0.84[CHB][hapmap]
rs9470270	0.85[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885806	chr6:36349890-36621178	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	103 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36411600-36476400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:36430800-36488800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr6:36437800-36468000	Strong transcription	Fetal Muscle Leg	muscle
4	chr6:36437800-36477600	Strong transcription	Fetal Thymus	thymus
5	chr6:36447200-36477600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr6:36447400-36477800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr6:36450000-36479800	Weak transcription	Stomach Mucosa	stomach
8	chr6:36455200-36476400	Weak transcription	Pancreas	Pancrea
9	chr6:36456000-36467600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr6:36456400-36512600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr6:36457200-36469600	Strong transcription	Fetal Intestine Small	intestine
12	chr6:36457400-36464600	Weak transcription	Psoas Muscle	Psoas
13	chr6:36457400-36484400	Weak transcription	Right Atrium	heart
14	chr6:36459400-36464200	Strong transcription	Right Ventricle	heart
15	chr6:36459400-36468000	Strong transcription	Muscle Satellite Cultured Cells	--
16	chr6:36459600-36469600	Strong transcription	Fetal Stomach	stomach
17	chr6:36459800-36467000	Weak transcription	Gastric	stomach
18	chr6:36460600-36467800	Strong transcription	HSMMtube	muscle
19	chr6:36460600-36468000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr6:36461000-36466000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr6:36461000-36469800	Strong transcription	Fetal Intestine Large	intestine
22	chr6:36461200-36463800	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr6:36461200-36465200	Strong transcription	Brain Germinal Matrix	brain
24	chr6:36461200-36465400	Strong transcription	A549	lung
25	chr6:36461200-36465600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr6:36461200-36465600	Strong transcription	Rectal Smooth Muscle	rectum
27	chr6:36461200-36465600	Strong transcription	Thymus	Thymus
28	chr6:36461200-36466000	Strong transcription	Duodenum Smooth Muscle	Duodenum
29	chr6:36461200-36468000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr6:36461200-36468000	Strong transcription	Liver	Liver
31	chr6:36461200-36468000	Strong transcription	Duodenum Mucosa	Duodenum
32	chr6:36461200-36468000	Strong transcription	Fetal Brain Female	brain
33	chr6:36461200-36468000	Strong transcription	Fetal Lung	lung
34	chr6:36461200-36468000	Strong transcription	Fetal Muscle Trunk	muscle
35	chr6:36461200-36468000	Strong transcription	Rectal Mucosa Donor 31	rectum
36	chr6:36461200-36468000	Strong transcription	Sigmoid Colon	Sigmoid Colon
37	chr6:36461200-36468000	Strong transcription	NH-A	brain
38	chr6:36461200-36468800	Strong transcription	Placenta	Placenta
39	chr6:36461200-36468800	Strong transcription	Dnd41	blood
40	chr6:36461200-36469200	Strong transcription	Rectal Mucosa Donor 29	rectum
41	chr6:36461200-36472200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr6:36461200-36475400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
43	chr6:36461200-36475400	Strong transcription	Primary B cells from peripheral blood	blood
44	chr6:36461400-36465600	Strong transcription	K562	blood
45	chr6:36461400-36468000	Strong transcription	HSMM	muscle
46	chr6:36461400-36481400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
47	chr6:36461600-36476400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
48	chr6:36461800-36463800	Strong transcription	Brain Cingulate Gyrus	brain
49	chr6:36461800-36465800	Strong transcription	NHDF-Ad	bronchial
50	chr6:36461800-36468400	Strong transcription	Left Ventricle	heart

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