Variant report

Variant	rs9368936
Chromosome Location	chr6:36476767-36476768
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:36474397..36477191-chr6:36544292..36546123,2	MCF-7	breast:
2	chr6:36474628..36477147-chr6:36484775..36487210,3	K562	blood:
3	chr6:36470331..36472950-chr6:36474034..36477426,3	K562	blood:
4	chr6:36409564..36413749-chr6:36473812..36477926,5	K562	blood:
5	chr6:36470157..36472950-chr6:36474808..36477426,3	K562	blood:
6	chr6:36475084..36480133-chr6:36561035..36564418,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000112081	Chromatin interaction
ENSG00000112078	Chromatin interaction
ENSG00000179165	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs2071809	1.00[CHB][hapmap];0.89[JPT][hapmap];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3798480	0.82[CHB][hapmap]
rs4295471	0.80[CHB][hapmap]
rs6906885	0.84[CHB][hapmap]
rs6919571	0.85[CHB][hapmap]
rs7771459	0.82[CHB][hapmap]
rs9296180	0.85[CHB][hapmap]
rs9296181	0.82[CHB][hapmap]
rs9368931	0.82[CHB][hapmap]
rs9394349	0.82[CHB][hapmap]
rs9394350	0.81[CHB][hapmap]
rs9470270	0.82[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885806	chr6:36349890-36621178	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	103 gene(s)	inside rSNPs	diseases
2	nsv5260	chr6:36471464-36516119	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36430800-36488800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:36437800-36477600	Strong transcription	Fetal Thymus	thymus
3	chr6:36447200-36477600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr6:36447400-36477800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr6:36450000-36479800	Weak transcription	Stomach Mucosa	stomach
6	chr6:36456400-36512600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr6:36457400-36484400	Weak transcription	Right Atrium	heart
8	chr6:36461400-36481400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr6:36462200-36477800	Strong transcription	Primary hematopoietic stem cells	blood
10	chr6:36462600-36477400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr6:36463000-36507200	Weak transcription	Fetal Brain Male	brain
12	chr6:36463600-36493600	Strong transcription	Monocytes-CD14+_RO01746	blood
13	chr6:36463800-36478000	Weak transcription	Brain Cingulate Gyrus	brain
14	chr6:36463800-36493400	Strong transcription	Primary monocytes fromperipheralblood	blood
15	chr6:36463800-36513600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr6:36464200-36477600	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr6:36465200-36477800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr6:36465400-36477400	Weak transcription	NHEK	skin
19	chr6:36465400-36477600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr6:36465400-36477600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr6:36465600-36489800	Weak transcription	Psoas Muscle	Psoas
22	chr6:36467800-36477800	Weak transcription	Colon Smooth Muscle	Colon
23	chr6:36467800-36479800	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr6:36468000-36477600	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr6:36468000-36482400	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr6:36468000-36487000	Weak transcription	Aorta	Aorta
27	chr6:36469000-36482400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr6:36469400-36477200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr6:36469400-36477200	Strong transcription	Primary B cells from cord blood	blood
30	chr6:36469600-36479000	Strong transcription	HSMM	muscle
31	chr6:36470400-36477600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
32	chr6:36470400-36480400	Strong transcription	Fetal Lung	lung
33	chr6:36470600-36498800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
34	chr6:36471400-36477600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr6:36472800-36483200	Strong transcription	Fetal Muscle Leg	muscle
36	chr6:36472800-36483400	Strong transcription	Fetal Muscle Trunk	muscle
37	chr6:36473200-36480200	Strong transcription	HSMMtube	muscle
38	chr6:36473600-36477600	Weak transcription	Muscle Satellite Cultured Cells	--
39	chr6:36473600-36482000	Weak transcription	Skeletal Muscle Female	skeletal muscle
40	chr6:36473600-36491400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
41	chr6:36473600-36492200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr6:36473600-36500000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr6:36473800-36477600	Weak transcription	H1 Cell Line	embryonic stem cell
44	chr6:36473800-36477800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
45	chr6:36473800-36479200	Strong transcription	Duodenum Smooth Muscle	Duodenum
46	chr6:36473800-36482800	Weak transcription	Hela-S3	cervix
47	chr6:36473800-36490400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr6:36474000-36495200	Weak transcription	Fetal Heart	heart
49	chr6:36474200-36477800	Weak transcription	Rectal Smooth Muscle	rectum
50	chr6:36474200-36482800	Weak transcription	GM12878-XiMat	blood

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