Variant report

Variant	rs9394350
Chromosome Location	chr6:36389377-36389378
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:36388375..36397373-chr6:36559893..36568556,25	K562	blood:
2	chr6:36388047..36404187-chr6:36407090..36418492,47	K562	blood:
3	chr6:36386467..36388815-chr6:36389066..36391918,3	MCF-7	breast:
4	chr6:36385781..36389716-chr6:36561820..36563529,3	MCF-7	breast:
5	chr6:36386854..36389830-chr6:36585117..36586872,2	MCF-7	breast:
6	chr6:36307342..36310235-chr6:36387767..36390340,2	K562	blood:
7	chr6:36388539..36397962-chr6:36560062..36566089,23	K562	blood:
8	chr6:36379225..36382652-chr6:36387378..36390087,3	K562	blood:
9	chr6:36388941..36391897-chr6:36513607..36515453,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000112079	Chromatin interaction
ENSG00000112081	Chromatin interaction
ENSG00000112078	Chromatin interaction
ENSG00000179165	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs1076928	0.93[CEU][hapmap];0.89[CHB][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1076929	0.81[JPT][hapmap]
rs11757823	0.93[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13210133	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2071809	0.84[CHB][hapmap]
rs2145749	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2187810	0.93[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2234064	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2234071	0.92[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3798480	1.00[CHB][hapmap];0.86[JPT][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4295471	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4308555	0.81[CHB][hapmap];0.87[JPT][hapmap]
rs56077076	0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs605684	0.81[YRI][hapmap]
rs614028	0.81[YRI][hapmap]
rs619011	0.81[YRI][hapmap]
rs621796	0.81[YRI][hapmap]
rs632943	0.81[YRI][hapmap]
rs659726	0.81[YRI][hapmap]
rs6905318	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6906885	0.92[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6919571	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6928048	0.80[CHB][hapmap];0.86[JPT][hapmap]
rs6931970	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7755006	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7765868	0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7766404	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7771459	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9296180	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9296181	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9296182	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9357212	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9357213	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9366904	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9368924	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9368926	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9368928	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9368929	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9368930	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9368931	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9368936	0.81[CHB][hapmap]
rs9380569	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9380572	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9394349	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9462182	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9470270	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885806	chr6:36349890-36621178	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	103 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs9394350	ETV7	cis	lung	GTEx
rs9394350	ETV7	cis	Whole Blood	GTEx

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36382800-36390200	Weak transcription	Fetal Intestine Small	intestine
2	chr6:36382800-36390600	Weak transcription	HUVEC	blood vessel
3	chr6:36386600-36390000	Weak transcription	Pancreas	Pancrea
4	chr6:36386600-36390400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr6:36386600-36390600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr6:36386600-36390600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr6:36386800-36390600	Weak transcription	Placenta	Placenta
8	chr6:36386800-36390800	Weak transcription	Esophagus	oesophagus
9	chr6:36386800-36391200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr6:36387000-36390600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr6:36387800-36390000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr6:36387800-36390200	Weak transcription	NHEK	skin
13	chr6:36387800-36390400	Weak transcription	Primary neutrophils fromperipheralblood	blood
14	chr6:36387800-36390400	Weak transcription	HMEC	breast
15	chr6:36388000-36390400	Weak transcription	Primary monocytes fromperipheralblood	blood
16	chr6:36388000-36390600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr6:36388200-36390200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr6:36388200-36390600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr6:36388400-36390000	Weak transcription	Hela-S3	cervix
20	chr6:36388400-36390400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr6:36388400-36390400	Weak transcription	Monocytes-CD14+_RO01746	blood

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