Variant report

Variant	rs4308555
Chromosome Location	chr6:36349354-36349355
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:36323097..36324990-chr6:36349232..36352025,2	MCF-7	breast:
2	chr6:36348504..36350017-chr6:36410247..36411932,2	K562	blood:

Variant related genes	Relation type
ENSG00000179165	Chromatin interaction
ENSG00000112078	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1076928	0.81[JPT][hapmap];0.80[ASN][1000 genomes]
rs1076929	0.95[CHB][hapmap];0.95[JPT][hapmap];0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10947604	0.85[EUR][1000 genomes]
rs11755362	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11757823	0.85[JPT][hapmap];0.86[ASN][1000 genomes]
rs11759903	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13210133	0.86[ASN][1000 genomes]
rs2187810	0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs2234064	0.80[ASN][1000 genomes]
rs2234069	0.84[EUR][1000 genomes]
rs2234071	0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs3798480	0.80[ASN][1000 genomes]
rs4295471	0.86[JPT][hapmap]
rs4713968	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6901513	0.85[EUR][1000 genomes]
rs6905318	0.80[ASN][1000 genomes]
rs6906885	0.81[ASN][1000 genomes]
rs6919571	0.86[JPT][hapmap]
rs6928048	0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs7771459	0.87[JPT][hapmap]
rs9296180	0.86[JPT][hapmap]
rs9296181	0.87[JPT][hapmap]
rs9368924	0.80[ASN][1000 genomes]
rs9368931	0.87[JPT][hapmap]
rs9394349	0.87[JPT][hapmap]
rs9394350	0.81[CHB][hapmap];0.87[JPT][hapmap]
rs9470270	0.87[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428481	chr6:36219000-36365746	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36326800-36354000	Weak transcription	Small Intestine	intestine
2	chr6:36327000-36354000	Weak transcription	Right Atrium	heart
3	chr6:36328400-36351200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr6:36328400-36353400	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr6:36328800-36353600	Weak transcription	Brain Hippocampus Middle	brain
6	chr6:36333200-36353800	Weak transcription	Pancreas	Pancrea
7	chr6:36333800-36353600	Weak transcription	Stomach Mucosa	stomach
8	chr6:36334600-36351000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr6:36339200-36354200	Weak transcription	Esophagus	oesophagus
10	chr6:36339800-36353600	Weak transcription	Lung	lung
11	chr6:36341600-36350800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr6:36341800-36350800	Weak transcription	Spleen	Spleen
13	chr6:36344200-36354000	Weak transcription	Duodenum Mucosa	Duodenum
14	chr6:36345000-36351000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr6:36345400-36351800	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr6:36345600-36350400	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr6:36346000-36350200	Weak transcription	Aorta	Aorta
18	chr6:36346800-36351000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chr6:36347200-36351000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr6:36349000-36349600	Enhancers	K562	blood
21	chr6:36349000-36350600	Weak transcription	Fetal Intestine Small	intestine
22	chr6:36349000-36350600	Flanking Active TSS	GM12878-XiMat	blood
23	chr6:36349000-36351600	Weak transcription	NHEK	skin
24	chr6:36349200-36349400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr6:36349200-36349400	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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