Variant report

Variant	rs6901513
Chromosome Location	chr6:36353169-36353170
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:36350662..36353563-chr6:36353746..36355330,2	K562	blood:
2	chr6:36350329..36353263-chr6:36561816..36565037,3	MCF-7	breast:
3	chr6:36352878..36356022-chr6:36409199..36411763,4	K562	blood:
4	chr6:36346736..36349026-chr6:36352669..36354274,2	K562	blood:
5	chr6:36352652..36355628-chr6:36561325..36563176,3	K562	blood:

Variant related genes	Relation type
ENSG00000112078	Chromatin interaction
ENSG00000224666	Chromatin interaction
ENSG00000112081	Chromatin interaction
ENSG00000179165	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1076929	0.84[EUR][1000 genomes]
rs10947604	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11755362	0.81[EUR][1000 genomes]
rs11759903	0.81[EUR][1000 genomes]
rs12181938	0.86[ASN][1000 genomes]
rs12660899	0.91[ASN][1000 genomes]
rs12663882	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1358981	0.83[ASN][1000 genomes]
rs1535510	0.84[ASN][1000 genomes]
rs2057351	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2180929	0.85[ASN][1000 genomes]
rs2234069	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35323926	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4308555	0.85[EUR][1000 genomes]
rs4713968	0.81[EUR][1000 genomes]
rs4713972	0.89[ASN][1000 genomes]
rs4713973	0.86[ASN][1000 genomes]
rs56763433	0.85[ASN][1000 genomes]
rs58153398	0.89[ASN][1000 genomes]
rs59955083	0.85[ASN][1000 genomes]
rs67313027	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6912117	0.83[ASN][1000 genomes]
rs6917489	0.91[ASN][1000 genomes]
rs6923337	0.88[ASN][1000 genomes]
rs6941593	0.85[ASN][1000 genomes]
rs73408850	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7745437	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7767377	0.85[ASN][1000 genomes]
rs7769765	0.83[ASN][1000 genomes]
rs881647	0.85[ASN][1000 genomes]
rs9470265	0.89[ASN][1000 genomes]
rs9470267	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9470273	0.84[ASN][1000 genomes]
rs9470280	0.85[ASN][1000 genomes]
rs9654588	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428481	chr6:36219000-36365746	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv885806	chr6:36349890-36621178	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	103 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36326800-36354000	Weak transcription	Small Intestine	intestine
2	chr6:36327000-36354000	Weak transcription	Right Atrium	heart
3	chr6:36328400-36353400	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr6:36328800-36353600	Weak transcription	Brain Hippocampus Middle	brain
5	chr6:36333200-36353800	Weak transcription	Pancreas	Pancrea
6	chr6:36333800-36353600	Weak transcription	Stomach Mucosa	stomach
7	chr6:36339200-36354200	Weak transcription	Esophagus	oesophagus
8	chr6:36339800-36353600	Weak transcription	Lung	lung
9	chr6:36344200-36354000	Weak transcription	Duodenum Mucosa	Duodenum
10	chr6:36350600-36353600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr6:36351200-36353800	Weak transcription	Aorta	Aorta
12	chr6:36351200-36354200	Weak transcription	Spleen	Spleen
13	chr6:36351400-36353200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr6:36351400-36353600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr6:36351400-36353800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr6:36351800-36354000	Weak transcription	NHEK	skin
17	chr6:36352000-36353200	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr6:36352000-36353600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chr6:36352000-36353600	Weak transcription	Primary T helper cells PMA-I stimulated	--
20	chr6:36352000-36353800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr6:36352000-36354200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr6:36352200-36353600	Weak transcription	Fetal Intestine Small	intestine
23	chr6:36352200-36354000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr6:36352200-36354200	Weak transcription	GM12878-XiMat	blood
25	chr6:36352400-36353600	Weak transcription	Sigmoid Colon	Sigmoid Colon

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