Variant report

Variant	rs58153398
Chromosome Location	chr6:36370394-36370395
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:36361723..36363438-chr6:36369913..36371565,2	K562	blood:
2	chr6:36361166..36363821-chr6:36368323..36371413,3	K562	blood:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10484615	0.80[ASN][1000 genomes]
rs10947604	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10947607	0.82[ASN][1000 genomes]
rs10947608	0.82[ASN][1000 genomes]
rs11757842	0.84[ASN][1000 genomes]
rs11759996	0.81[ASN][1000 genomes]
rs12181938	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12660899	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12663882	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1358981	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1535510	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16888552	0.84[ASN][1000 genomes]
rs2057351	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2145751	0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2180929	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2234069	0.89[ASN][1000 genomes]
rs35323926	0.82[ASN][1000 genomes]
rs4713972	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4713973	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56763433	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58093537	0.82[ASN][1000 genomes]
rs59955083	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6457920	0.82[ASN][1000 genomes]
rs67313027	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6899421	0.82[ASN][1000 genomes]
rs6901513	0.89[ASN][1000 genomes]
rs6905347	0.82[ASN][1000 genomes]
rs6905686	0.82[ASN][1000 genomes]
rs6912117	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6917489	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6917981	0.82[ASN][1000 genomes]
rs6923337	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6926522	0.82[ASN][1000 genomes]
rs6928087	0.85[ASN][1000 genomes]
rs6930496	0.82[ASN][1000 genomes]
rs6936942	0.82[ASN][1000 genomes]
rs6941593	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73408850	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73411055	0.82[ASN][1000 genomes]
rs7745437	0.81[ASN][1000 genomes]
rs7752714	0.82[ASN][1000 genomes]
rs7767377	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7769765	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7771028	0.82[ASN][1000 genomes]
rs9462186	0.82[ASN][1000 genomes]
rs9470267	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9470273	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs9470280	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs9654588	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9767243	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885806	chr6:36349890-36621178	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	103 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36368600-36370800	Weak transcription	GM12878-XiMat	blood
2	chr6:36369800-36372000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr6:36370200-36370600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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