Variant report

Variant	rs16888552
Chromosome Location	chr6:36412658-36412659
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:15)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:15 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr6:36412248-36412738	MCF10A-Er-Src	breast:	n/a	n/a
2	MXI1	chr6:36410078-36412697	SK-N-SH	brain:	n/a	n/a
3	POLR2A	chr6:36411869-36412689	K562	blood:	n/a	n/a
4	CHD1	chr6:36408663-36412851	IMR90	lung:	n/a	n/a
5	STAT3	chr6:36412387-36412751	MCF10A-Er-Src	breast:	n/a	n/a
6	FOS	chr6:36412326-36412709	MCF10A-Er-Src	breast:	n/a	n/a
7	MYC	chr6:36412274-36412696	MCF10A-Er-Src	breast:	n/a	n/a
8	CEBPB	chr6:36412322-36412690	IMR90	lung:	n/a	n/a
9	STAT3	chr6:36412304-36412703	MCF10A-Er-Src	breast:	n/a	n/a
10	STAT3	chr6:36412314-36412699	MCF10A-Er-Src	breast:	n/a	n/a
11	FOS	chr6:36412052-36412717	MCF10A-Er-Src	breast:	n/a	n/a
12	HCFC1	chr6:36409923-36412699	Hela-S3	cervix:	n/a	n/a
13	MAFK	chr6:36412304-36412703	IMR90	lung:	n/a	n/a
14	STAT3	chr6:36412266-36412823	MCF10A-Er-Src	breast:	n/a	n/a
15	POLR2A	chr6:36408770-36412763	IMR90	lung:	n/a	n/a

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:36408693..36414213-chr6:36560362..36565197,15	MCF-7	breast:
2	chr6:36411542..36413108-chr6:36441191..36443948,2	K562	blood:
3	chr6:35995997..35997566-chr6:36410510..36413079,2	K562	blood:
4	chr6:36403741..36414959-chr6:36560215..36569964,50	K562	blood:
5	chr6:36406846..36414829-chr6:36558734..36566025,43	K562	blood:
6	chr6:36410473..36414235-chr6:36416429..36423107,7	MCF-7	breast:
7	chr6:36402240..36404481-chr6:36411422..36413820,2	MCF-7	breast:

No data

Variant related genes	Relation type
PXT1	TF binding region
ENSG00000112081	Chromatin interaction
ENSG00000112062	Chromatin interaction
ENSG00000240733	Chromatin interaction

Extended variants
information (count: 145 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:144)

rs_ID	r²[population]
rs1003249	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10484615	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1061632	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap]
rs10947607	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10947608	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10947611	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10947614	0.81[CEU][hapmap]
rs10947615	0.87[CEU][hapmap]
rs1137628	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11755264	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11756413	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11757842	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11759996	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1191	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12110954	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12181938	0.90[ASN][1000 genomes]
rs12190062	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12209196	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12211528	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12660899	0.84[ASN][1000 genomes]
rs12663882	0.84[ASN][1000 genomes]
rs1358981	0.83[CEU][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1535510	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.95[YRI][hapmap];0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16888690	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1983781	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1985423	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2007741	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2057351	0.84[ASN][1000 genomes]
rs2071810	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2145751	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2146333	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2180929	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2187827	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2239807	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2239808	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2267925	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2267926	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2267927	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2267928	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2267929	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2267931	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2267932	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2300064	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2894407	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3752479	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3756911	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3756912	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3778019	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3798470	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3798472	1.00[CEU][hapmap];0.95[JPT][hapmap];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3798473	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3798474	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3819760	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3822970	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4598	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4713972	0.84[ASN][1000 genomes]
rs4713973	0.82[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs55829962	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56086408	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56763433	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57423505	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs57646047	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs58093537	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58153398	0.84[ASN][1000 genomes]
rs59104483	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs59955083	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60043926	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6457920	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6457921	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6457922	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6457923	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6457928	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6457929	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs67018593	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs67313027	0.84[ASN][1000 genomes]
rs67640018	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6899372	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6899421	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6899631	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6902076	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6902473	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6905347	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6905686	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6911877	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6912117	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6912982	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6913530	0.81[CEU][hapmap]
rs6913613	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6913693	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6913714	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6917489	0.84[ASN][1000 genomes]
rs6917951	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6917981	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6920166	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6923337	0.84[ASN][1000 genomes]
rs6926522	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6926796	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6927896	1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[CHD][hapmap];0.93[GIH][hapmap];0.91[JPT][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6928087	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6930496	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6936942	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6939445	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6941593	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73408850	0.84[ASN][1000 genomes]
rs73411055	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73413258	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73413267	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7344	0.80[CEU][hapmap]
rs7738604	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7742459	1.00[CEU][hapmap];0.85[JPT][hapmap];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7743396	0.81[CEU][hapmap]
rs7745411	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7749358	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7752714	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7754363	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7763089	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7767377	0.91[ASN][1000 genomes]
rs7769765	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7771028	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7772524	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7772800	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9296193	0.81[CEU][hapmap]
rs933236	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9462185	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9462186	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9462190	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9462193	1.00[CEU][hapmap];0.95[JPT][hapmap];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9470265	0.81[JPT][hapmap]
rs9470267	0.84[ASN][1000 genomes]
rs9470273	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9470280	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];0.95[JPT][hapmap];0.88[MEX][hapmap];0.91[TSI][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9470289	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9470291	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9470293	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9470294	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9470295	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9470296	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9470297	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9470300	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9470302	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9470304	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9654588	0.84[ASN][1000 genomes]
rs9767243	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9767778	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885806	chr6:36349890-36621178	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	103 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs16888552	KCTD20	cis	Skin Sun Exposed Lower leg	GTEx
rs16888552	PNPLA1	cis	cerebellum	SCAN
rs16888552	TULP1	cis	cerebellum	SCAN
rs16888552	C6orf1	cis	parietal	SCAN

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36410600-36412800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr6:36411200-36412800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr6:36411400-36412800	Flanking Active TSS	Primary T cells from cord blood	blood
4	chr6:36411400-36412800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
5	chr6:36411400-36412800	Flanking Active TSS	Fetal Brain Female	brain
6	chr6:36411600-36412800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
7	chr6:36411600-36412800	Flanking Active TSS	Adipose Nuclei	Adipose
8	chr6:36411600-36412800	Flanking Active TSS	Hela-S3	cervix
9	chr6:36411600-36412800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
10	chr6:36411600-36439800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr6:36411600-36476400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr6:36411800-36412800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr6:36411800-36412800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr6:36411800-36412800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr6:36411800-36412800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
16	chr6:36411800-36412800	Flanking Active TSS	Psoas Muscle	Psoas
17	chr6:36411800-36412800	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
18	chr6:36411800-36412800	Flanking Active TSS	Dnd41	blood
19	chr6:36411800-36412800	Flanking Active TSS	NHEK	skin
20	chr6:36411800-36412800	Flanking Active TSS	Osteobl	bone
21	chr6:36411800-36413600	Enhancers	Stomach Mucosa	stomach
22	chr6:36411800-36439400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr6:36412000-36412800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr6:36412000-36412800	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr6:36412000-36412800	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr6:36412000-36412800	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
27	chr6:36412000-36412800	Flanking Active TSS	Rectal Smooth Muscle	rectum
28	chr6:36412000-36413000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
29	chr6:36412000-36413000	Enhancers	Fetal Brain Male	brain
30	chr6:36412200-36412800	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
31	chr6:36412200-36412800	Enhancers	Primary neutrophils fromperipheralblood	blood
32	chr6:36412200-36412800	Enhancers	Primary B cells from peripheral blood	blood
33	chr6:36412200-36412800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
34	chr6:36412200-36412800	Enhancers	Cortex derived primary cultured neurospheres	brain
35	chr6:36412200-36413000	Enhancers	Fetal Stomach	stomach
36	chr6:36412200-36413000	Enhancers	Fetal Thymus	thymus
37	chr6:36412200-36413400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr6:36412200-36413600	Enhancers	Primary monocytes fromperipheralblood	blood
39	chr6:36412200-36413600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
40	chr6:36412200-36413600	Enhancers	Placenta	Placenta
41	chr6:36412200-36414800	Weak transcription	Ovary	ovary
42	chr6:36412200-36449200	Weak transcription	Esophagus	oesophagus
43	chr6:36412400-36412800	Active TSS	HUES6 Cell Line	embryonic stem cell
44	chr6:36412400-36412800	Enhancers	iPS-15b Cell Line	embryonic stem cell
45	chr6:36412400-36412800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr6:36412400-36412800	Enhancers	Brain Inferior Temporal Lobe	brain
47	chr6:36412400-36412800	Enhancers	Brain Substantia Nigra	brain
48	chr6:36412400-36412800	Enhancers	Sigmoid Colon	Sigmoid Colon
49	chr6:36412400-36413000	Enhancers	Placenta Amnion	Placenta Amnion
50	chr6:36412400-36413200	Enhancers	Primary hematopoietic stem cells	blood

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