Variant report

Variant	rs6928087
Chromosome Location	chr6:36410190-36410191
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MTA3	chr6:36410057-36412223	GM12878	blood:	n/a	n/a
2	RELA	chr6:36410182-36410927	GM19099	blood:	n/a	n/a
3	POLR2A	chr6:36409846-36411444	HepG2	liver:	n/a	n/a
4	POLR2A	chr6:36409868-36411331	K562	blood:	n/a	n/a
5	EP300	chr6:36410153-36410910	K562	blood:	n/a	chr6:36410156-36410165
6	FOS	chr6:36410113-36410851	MCF10A-Er-Src	breast:	n/a	chr6:36410257-36410266 chr6:36410736-36410746 chr6:36410736-36410746 chr6:36410736-36410746 chr6:36410735-36410746 chr6:36410737-36410745 chr6:36410735-36410747
7	POLR2A	chr6:36410087-36411052	K562	blood:	n/a	n/a
8	POLR2A	chr6:36410176-36411390	PBDE	blood:	n/a	n/a
9	MXI1	chr6:36410123-36412158	IMR90	lung:	n/a	n/a
10	POLR2A	chr6:36408974-36412231	Hela-S3	cervix:	n/a	n/a
11	MXI1	chr6:36410078-36412697	SK-N-SH	brain:	n/a	n/a
12	MBD4	chr6:36410154-36411136	HepG2	liver:	n/a	n/a
13	POLR2A	chr6:36409991-36411241	HepG2	liver:	n/a	n/a
14	NR2F2	chr6:36408700-36411574	K562	blood:	n/a	n/a
15	POLR2A	chr6:36409813-36411204	HepG2	liver:	n/a	n/a
16	SP1	chr6:36410163-36410934	A549	lung:	n/a	n/a
17	NFIC	chr6:36410120-36411137	HepG2	liver:	n/a	n/a
18	CHD1	chr6:36408663-36412851	IMR90	lung:	n/a	n/a
19	POLR2A	chr6:36409645-36411313	K562	blood:	n/a	n/a
20	FOSL1	chr6:36410186-36411086	HCT-116	colon:	n/a	chr6:36410257-36410266 chr6:36410736-36410746 chr6:36410736-36410746 chr6:36410736-36410746 chr6:36410737-36410745 chr6:36410735-36410747 chr6:36410735-36410746
21	POLR2A	chr6:36410166-36411385	HL-60	blood:	n/a	n/a
22	TEAD4	chr6:36410154-36410969	K562	blood:	n/a	n/a
23	TBP	chr6:36410177-36411389	K562	blood:	n/a	n/a
24	JUND	chr6:36410165-36411213	MCF-7	breast:	n/a	chr6:36410257-36410266 chr6:36410735-36410746 chr6:36410736-36410746 chr6:36410736-36410746 chr6:36410736-36410746 chr6:36410737-36410745 chr6:36410735-36410747
25	CBX3	chr6:36410090-36411206	K562	blood:	n/a	chr6:36410112-36410123
26	PML	chr6:36410170-36411516	GM12878	blood:	n/a	n/a
27	NFIC	chr6:36410071-36410939	GM12878	blood:	n/a	n/a
28	POLR2A	chr6:36409941-36411286	HCT-116	colon:	n/a	n/a
29	TBP	chr6:36410165-36410830	Hela-S3	cervix:	n/a	n/a
30	POLR2A	chr6:36410106-36411062	K562	blood:	n/a	n/a
31	POLR2A	chr6:36410184-36411576	SK-N-MC	brain:	n/a	n/a
32	MAX	chr6:36409984-36411449	HepG2	liver:	n/a	chr6:36410940-36410950 chr6:36410700-36410709
33	POLR2A	chr6:36410026-36411071	K562	blood:	n/a	n/a
34	MYC	chr6:36410039-36411068	A549	lung:	n/a	chr6:36410940-36410950 chr6:36410700-36410709
35	POLR2A	chr6:36410124-36412108	GM12891	blood:	n/a	n/a
36	MYBL2	chr6:36410130-36411491	HepG2	liver:	n/a	n/a
37	MBD4	chr6:36410182-36411106	HepG2	liver:	n/a	n/a
38	POLR2A	chr6:36409829-36411454	K562	blood:	n/a	n/a
39	MAZ	chr6:36409995-36411649	IMR90	lung:	n/a	chr6:36410940-36410950 chr6:36410700-36410709
40	MYC	chr6:36410115-36411249	K562	blood:	n/a	chr6:36410940-36410950 chr6:36410700-36410709
41	MTA3	chr6:36410111-36411064	GM12878	blood:	n/a	n/a
42	POLR2A	chr6:36408961-36411312	Hela-S3	cervix:	n/a	n/a
43	POLR2A	chr6:36410123-36411394	Raji	blood:	n/a	n/a
44	POLR2A	chr6:36410127-36411055	GM12878	blood:	n/a	n/a
45	JUN	chr6:36409858-36412257	K562	blood:	n/a	chr6:36410257-36410266 chr6:36410736-36410746 chr6:36410736-36410746 chr6:36410736-36410746 chr6:36410737-36410745 chr6:36410735-36410747
46	POLR2A	chr6:36410051-36411392	K562	blood:	n/a	n/a
47	TBL1XR1	chr6:36410187-36410982	K562	blood:	n/a	n/a
48	ELF1	chr6:36410077-36411084	K562	blood:	n/a	chr6:36410263-36410272 chr6:36410998-36411007
49	POLR2A	chr6:36410001-36411269	K562	blood:	n/a	n/a
50	SMARCC1	chr6:36410188-36411417	Hela-S3	cervix:	n/a	chr6:36410736-36410745

No.	Distal block	Cell Line	Cell type
1	chr6:36409676..36411524-chr6:36561404..36563717,3	MCF-7	breast:
2	chr6:36408693..36414213-chr6:36560362..36565197,15	MCF-7	breast:
3	chr6:30687753..30689397-chr6:36409717..36412070,2	K562	blood:
4	chr6:36352878..36356022-chr6:36409199..36411763,4	K562	blood:
5	chr6:36403741..36414959-chr6:36560215..36569964,50	K562	blood:
6	chr6:36406846..36414829-chr6:36558734..36566025,43	K562	blood:
7	chr6:36409344..36412329-chr6:36513269..36516052,4	MCF-7	breast:
8	chr6:36164615..36166150-chr6:36409127..36410666,2	K562	blood:
9	chr19:675464..676459-chr6:36410143..36410926,2	Hela-S3	cervix:
10	chr6:36408851..36410684-chr6:36512554..36515336,3	K562	blood:
11	chr6:36410156..36410780-chr7:105752252..105753012,2	Hela-S3	cervix:
12	chr6:36409184..36410963-chr6:36513836..36516900,3	K562	blood:

Variant related genes	Relation type
KCTD20	TF binding region
ENSG00000224666	Chromatin interaction
ENSG00000112079	Chromatin interaction
ENSG00000246982	Chromatin interaction
ENSG00000010030	Chromatin interaction
ENSG00000196230	Chromatin interaction
ENSG00000070404	Chromatin interaction
ENSG00000112081	Chromatin interaction
ENSG00000008282	Chromatin interaction
ENSG00000096070	Chromatin interaction

Extended variants
information (count: 143 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:142)

rs_ID	r²[population]
rs1003249	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10484615	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1061632	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10947607	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10947608	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10947611	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10947615	0.81[CEU][hapmap]
rs1137628	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11755264	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11756413	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11757842	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11759996	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1191	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12110954	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12181938	0.91[ASN][1000 genomes]
rs12190062	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12209196	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12211528	0.85[EUR][1000 genomes]
rs12660899	0.85[ASN][1000 genomes]
rs12663882	0.84[ASN][1000 genomes]
rs1358981	0.88[CEU][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1535510	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16888552	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16888690	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1983781	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1985423	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2007741	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2057351	0.84[ASN][1000 genomes]
rs2071810	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2145751	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2146333	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2180929	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2187827	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2239807	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2239808	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2267925	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2267926	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2267927	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2267928	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2267929	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2267931	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2267932	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2300064	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2894407	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3752479	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3756911	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3756912	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3778019	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3798470	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3798472	1.00[CEU][hapmap];0.95[JPT][hapmap];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3798473	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3798474	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3819760	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3822970	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4598	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4713972	0.85[ASN][1000 genomes]
rs4713973	0.91[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs55829962	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56086408	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56763433	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57423505	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs57646047	0.86[EUR][1000 genomes]
rs58093537	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58153398	0.85[ASN][1000 genomes]
rs59104483	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59955083	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60043926	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6457920	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6457921	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6457922	0.85[AMR][1000 genomes]
rs6457923	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6457928	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6457929	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs67018593	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs67313027	0.84[ASN][1000 genomes]
rs67640018	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6899372	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6899421	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6899631	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6902076	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6902473	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6905347	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6905686	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6911877	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6912117	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6912982	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6913530	0.80[CEU][hapmap]
rs6913613	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6913693	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6913714	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6917489	0.85[ASN][1000 genomes]
rs6917951	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6917981	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6920166	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6923337	0.84[ASN][1000 genomes]
rs6926522	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6926796	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6927896	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6930496	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6936942	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6939445	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6941593	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73408850	0.84[ASN][1000 genomes]
rs73411055	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73413258	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73413267	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7738604	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7742459	1.00[CEU][hapmap];0.86[JPT][hapmap];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7743396	0.80[CEU][hapmap]
rs7745411	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7749358	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7752714	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7754363	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7763089	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7767377	0.91[ASN][1000 genomes]
rs7769765	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7771028	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7772524	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7772800	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9296193	0.80[CEU][hapmap]
rs933236	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9462185	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9462186	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9462190	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9462193	1.00[CEU][hapmap];0.95[JPT][hapmap];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9470265	0.81[JPT][hapmap]
rs9470267	0.84[ASN][1000 genomes]
rs9470273	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9470280	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9470289	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9470291	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9470293	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9470294	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9470295	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9470296	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9470297	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9470300	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9470302	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9470304	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9654588	0.84[ASN][1000 genomes]
rs9767243	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9767778	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885806	chr6:36349890-36621178	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	103 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6928087	KCTD20	cis	Skin Sun Exposed Lower leg	GTEx

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36399000-36410200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr6:36407000-36410200	Enhancers	Fetal Intestine Small	intestine
3	chr6:36407400-36410200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr6:36408400-36410600	Flanking Active TSS	K562	blood
5	chr6:36408600-36410200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr6:36408600-36410200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr6:36408600-36410200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr6:36408600-36410200	Enhancers	HSMMtube	muscle
9	chr6:36408600-36410200	Enhancers	HUVEC	blood vessel
10	chr6:36408600-36410200	Enhancers	NHDF-Ad	bronchial
11	chr6:36408800-36410200	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr6:36408800-36410200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr6:36408800-36410200	Enhancers	Pancreatic Islets	Pancreatic Islet
14	chr6:36408800-36410200	Enhancers	Fetal Stomach	stomach
15	chr6:36408800-36410200	Enhancers	Rectal Smooth Muscle	rectum
16	chr6:36408800-36410200	Enhancers	NH-A	brain
17	chr6:36408800-36410200	Enhancers	NHLF	lung
18	chr6:36409000-36410200	Enhancers	H1 Cell Line	embryonic stem cell
19	chr6:36409000-36410200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr6:36409000-36410200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr6:36409000-36410200	Enhancers	Cortex derived primary cultured neurospheres	brain
22	chr6:36409000-36410200	Enhancers	Duodenum Mucosa	Duodenum
23	chr6:36409000-36410200	Enhancers	Fetal Heart	heart
24	chr6:36409000-36410200	Enhancers	Fetal Intestine Large	intestine
25	chr6:36409000-36410200	Enhancers	Fetal Lung	lung
26	chr6:36409000-36410400	Enhancers	Placenta Amnion	Placenta Amnion
27	chr6:36409000-36410600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr6:36409000-36410600	Flanking Active TSS	Dnd41	blood
29	chr6:36409200-36410200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
30	chr6:36409200-36410200	Enhancers	Brain Inferior Temporal Lobe	brain
31	chr6:36409200-36410200	Enhancers	Fetal Muscle Trunk	muscle
32	chr6:36409200-36410200	Enhancers	Fetal Muscle Leg	muscle
33	chr6:36409200-36410200	Enhancers	Placenta	Placenta
34	chr6:36409200-36410600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
35	chr6:36409200-36411800	Active TSS	Brain Anterior Caudate	brain
36	chr6:36409400-36410200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr6:36409400-36410200	Weak transcription	Brain Angular Gyrus	brain
38	chr6:36409400-36410200	Active TSS	HepG2	liver
39	chr6:36409400-36410600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
40	chr6:36409600-36410200	Weak transcription	Colon Smooth Muscle	Colon
41	chr6:36409600-36410400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr6:36409600-36410600	Flanking Active TSS	Primary B cells from cord blood	blood
43	chr6:36409600-36410600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr6:36409600-36410600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr6:36409600-36410600	Flanking Active TSS	Osteobl	bone
46	chr6:36409600-36411600	Active TSS	HUES48 Cell Line	embryonic stem cell
47	chr6:36409600-36411600	Active TSS	HUES6 Cell Line	embryonic stem cell
48	chr6:36409600-36412200	Active TSS	ES-I3 Cell Line	embryonic stem cell
49	chr6:36409800-36410200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr6:36409800-36410200	Enhancers	Rectal Mucosa Donor 31	rectum

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