Variant report

Variant	rs6457922
Chromosome Location	chr6:36441474-36441475
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:36437874..36441513-chr6:36442107..36445031,4	K562	blood:
2	chr6:36411542..36413108-chr6:36441191..36443948,2	K562	blood:
3	chr6:36438735..36444025-chr6:36445712..36451079,5	K562	blood:
4	chr6:36437549..36439199-chr6:36440749..36443302,2	MCF-7	breast:

Extended variants
information (count: 102 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:101)

rs_ID	r²[population]
rs1003249	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10484615	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10947607	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10947608	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10947611	0.81[ASN][1000 genomes]
rs1137628	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11755264	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11756413	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11757842	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11759996	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1191	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12110954	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12190062	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12209196	0.80[EUR][1000 genomes]
rs1358981	0.81[AMR][1000 genomes]
rs16888552	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16888690	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1983781	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1985423	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2007741	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2071810	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2146333	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2180929	0.81[AMR][1000 genomes]
rs2187827	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2239807	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2239808	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2267927	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2267928	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2267929	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2267931	0.86[AMR][1000 genomes]
rs2267932	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2300064	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2894407	0.81[ASN][1000 genomes]
rs3752479	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3756911	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3756912	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3778019	0.81[ASN][1000 genomes]
rs3798470	0.81[ASN][1000 genomes]
rs3798472	0.81[ASN][1000 genomes]
rs3798473	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3798474	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3822970	0.81[ASN][1000 genomes]
rs4598	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs55829962	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs56086408	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56763433	0.81[AMR][1000 genomes]
rs57423505	0.84[AMR][1000 genomes]
rs58093537	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs59104483	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs59955083	0.81[AMR][1000 genomes]
rs60043926	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6457920	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6457921	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6457923	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs67018593	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6899421	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6899631	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6902473	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6905347	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6905686	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6911877	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6912117	0.81[AMR][1000 genomes]
rs6912982	0.81[ASN][1000 genomes]
rs6913693	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6917951	0.81[ASN][1000 genomes]
rs6917981	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6926522	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6926796	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6927896	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6928087	0.85[AMR][1000 genomes]
rs6930496	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6936942	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6939445	0.81[ASN][1000 genomes]
rs6941593	0.81[AMR][1000 genomes]
rs73411055	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73413258	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73413267	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7738604	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7745411	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7752714	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7754363	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7769765	0.81[AMR][1000 genomes]
rs7771028	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7772524	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7772800	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs933236	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9462185	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9462186	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9462190	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9470280	0.81[AMR][1000 genomes]
rs9470289	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9470291	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9470293	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9470294	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9470295	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9470296	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9470297	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9470300	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9470302	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9767243	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9767778	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885806	chr6:36349890-36621178	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	103 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36411600-36476400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:36412200-36449200	Weak transcription	Esophagus	oesophagus
3	chr6:36412600-36449000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr6:36412800-36443400	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr6:36412800-36447000	Weak transcription	Brain Cingulate Gyrus	brain
6	chr6:36412800-36448600	Weak transcription	HMEC	breast
7	chr6:36419000-36449200	Weak transcription	Pancreas	Pancrea
8	chr6:36423000-36449400	Weak transcription	Gastric	stomach
9	chr6:36423400-36449600	Weak transcription	Stomach Mucosa	stomach
10	chr6:36427600-36449200	Weak transcription	Rectal Smooth Muscle	rectum
11	chr6:36428600-36445800	Weak transcription	Aorta	Aorta
12	chr6:36428800-36442000	Weak transcription	Colon Smooth Muscle	Colon
13	chr6:36428800-36456600	Weak transcription	Right Atrium	heart
14	chr6:36429800-36449200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr6:36430000-36444600	Weak transcription	Fetal Heart	heart
16	chr6:36430000-36446000	Weak transcription	HUVEC	blood vessel
17	chr6:36430800-36488800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr6:36431200-36453600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr6:36431600-36447600	Weak transcription	Brain Angular Gyrus	brain
20	chr6:36431600-36449000	Weak transcription	Small Intestine	intestine
21	chr6:36431600-36449200	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr6:36431800-36449000	Weak transcription	A549	lung
23	chr6:36432000-36446800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr6:36432400-36449000	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr6:36432400-36449200	Weak transcription	NHDF-Ad	bronchial
26	chr6:36433800-36449200	Weak transcription	NHLF	lung
27	chr6:36436400-36441800	Strong transcription	HSMM	muscle
28	chr6:36436400-36448800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
29	chr6:36436800-36452400	Weak transcription	Fetal Brain Male	brain
30	chr6:36437000-36450400	Strong transcription	Dnd41	blood
31	chr6:36437200-36449400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
32	chr6:36437200-36455600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr6:36437200-36461400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
34	chr6:36437400-36446200	Weak transcription	Fetal Kidney	kidney
35	chr6:36437800-36441600	Strong transcription	Fetal Intestine Small	intestine
36	chr6:36437800-36441800	Strong transcription	Fetal Stomach	stomach
37	chr6:36437800-36442000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr6:36437800-36443000	Strong transcription	Primary monocytes fromperipheralblood	blood
39	chr6:36437800-36443800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr6:36437800-36444600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr6:36437800-36445000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr6:36437800-36450400	Strong transcription	HUES64 Cell Line	embryonic stem cell
43	chr6:36437800-36450600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr6:36437800-36455400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr6:36437800-36468000	Strong transcription	Fetal Muscle Leg	muscle
46	chr6:36437800-36477600	Strong transcription	Fetal Thymus	thymus
47	chr6:36438000-36443200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
48	chr6:36438000-36444000	Strong transcription	Monocytes-CD14+_RO01746	blood
49	chr6:36438000-36444600	Strong transcription	Placenta	Placenta
50	chr6:36438000-36449200	Weak transcription	Pancreatic Islets	Pancreatic Islet

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