Variant report

Variant	rs11757842
Chromosome Location	chr6:36412213-36412214
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:39)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:39 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MTA3	chr6:36410057-36412223	GM12878	blood:	n/a	n/a
2	CTCF	chr6:36411872-36412215	H1-hESC	embryonic stem cell:	n/a	n/a
3	RAD21	chr6:36411816-36412297	A549	lung:	n/a	n/a
4	MYC	chr6:36412010-36412643	MCF10A-Er-Src	breast:	n/a	n/a
5	POLR2A	chr6:36408974-36412231	Hela-S3	cervix:	n/a	n/a
6	TEAD4	chr6:36411623-36412598	K562	blood:	n/a	n/a
7	MXI1	chr6:36410078-36412697	SK-N-SH	brain:	n/a	n/a
8	POLR2A	chr6:36412212-36412557	MCF10A-Er-Src	breast:	n/a	n/a
9	WRNIP1	chr6:36411861-36412452	GM12878	blood:	n/a	n/a
10	GTF2F1	chr6:36411728-36412412	Hela-S3	cervix:	n/a	n/a
11	POLR2A	chr6:36411869-36412689	K562	blood:	n/a	n/a
12	CHD1	chr6:36408663-36412851	IMR90	lung:	n/a	n/a
13	CCNT2	chr6:36411758-36412252	K562	blood:	n/a	n/a
14	JUND	chr6:36411646-36412329	K562	blood:	n/a	n/a
15	TBL1XR1	chr6:36411797-36412399	K562	blood:	n/a	n/a
16	RAD21	chr6:36411778-36412228	Hela-S3	cervix:	n/a	n/a
17	FOXM1	chr6:36411737-36412254	GM12878	blood:	n/a	n/a
18	FOS	chr6:36412052-36412717	MCF10A-Er-Src	breast:	n/a	n/a
19	RCOR1	chr6:36411759-36412217	Hela-S3	cervix:	n/a	n/a
20	MAFF	chr6:36411330-36412254	K562	blood:	n/a	n/a
21	POLR2A	chr6:36411751-36412498	Hela-S3	cervix:	n/a	n/a
22	CTCF	chr6:36411567-36412589	SK-N-SH	brain:	n/a	n/a
23	USF2	chr6:36411965-36412405	Hela-S3	cervix:	n/a	n/a
24	CTCF	chr6:36411586-36412378	A549	lung:	n/a	n/a
25	JUN	chr6:36409858-36412257	K562	blood:	n/a	chr6:36410257-36410266 chr6:36410736-36410746 chr6:36410736-36410746 chr6:36410736-36410746 chr6:36410737-36410745 chr6:36410735-36410747
26	MYC	chr6:36411841-36412213	K562	blood:	n/a	n/a
27	CTCF	chr6:36411745-36412276	K562	blood:	n/a	n/a
28	RAD21	chr6:36411825-36412217	HepG2	liver:	n/a	n/a
29	HCFC1	chr6:36409923-36412699	Hela-S3	cervix:	n/a	n/a
30	GATA2	chr6:36412135-36412375	SH-SY5Y	brain:	n/a	chr6:36412244-36412254 chr6:36412148-36412161
31	RAD21	chr6:36411957-36412621	IMR90	lung:	n/a	n/a
32	POLR2A	chr6:36412182-36412237	MCF-7	breast:	n/a	n/a
33	POLR2A	chr6:36411585-36412329	HepG2	liver:	n/a	n/a
34	CTCF	chr6:36411821-36412218	K562	blood:	n/a	n/a
35	RUNX3	chr6:36411596-36412263	GM12878	blood:	n/a	n/a
36	MAX	chr6:36411683-36412244	K562	blood:	n/a	n/a
37	POLR2A	chr6:36408770-36412763	IMR90	lung:	n/a	n/a
38	NR2F2	chr6:36411612-36412446	K562	blood:	n/a	n/a
39	MYBL2	chr6:36411598-36412251	HepG2	liver:	n/a	n/a

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:36408693..36414213-chr6:36560362..36565197,15	MCF-7	breast:
2	chr6:36411542..36413108-chr6:36441191..36443948,2	K562	blood:
3	chr6:35995997..35997566-chr6:36410510..36413079,2	K562	blood:
4	chr6:36403741..36414959-chr6:36560215..36569964,50	K562	blood:
5	chr6:36406846..36414829-chr6:36558734..36566025,43	K562	blood:
6	chr6:36409344..36412329-chr6:36513269..36516052,4	MCF-7	breast:
7	chr6:36406492..36408758-chr6:36410909..36412604,2	MCF-7	breast:
8	chr6:36410473..36414235-chr6:36416429..36423107,7	MCF-7	breast:
9	chr6:36390597..36391521-chr6:36411302..36412518,4	K562	blood:
10	chr6:36402240..36404481-chr6:36411422..36413820,2	MCF-7	breast:

No data

Variant related genes	Relation type
PXT1	TF binding region
ENSG00000240733	Chromatin interaction
ENSG00000112062	Chromatin interaction
ENSG00000112079	Chromatin interaction
ENSG00000112081	Chromatin interaction

Extended variants
information (count: 145 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:144)

rs_ID	r²[population]
rs1003249	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10484615	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1061632	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap]
rs10947607	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10947608	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10947611	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10947614	0.81[CEU][hapmap]
rs10947615	0.87[CEU][hapmap]
rs1137628	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11755264	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11756413	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11759996	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1191	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12110954	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12181938	0.90[ASN][1000 genomes]
rs12190062	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12209196	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12211528	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12660899	0.84[ASN][1000 genomes]
rs12663882	0.84[ASN][1000 genomes]
rs1358981	0.83[CEU][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1535510	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16888552	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16888690	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1983781	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1985423	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2007741	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2057351	0.84[ASN][1000 genomes]
rs2071810	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2145751	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2146333	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2180929	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2187827	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2239807	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2239808	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2267925	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2267926	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2267927	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2267928	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2267929	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2267931	0.98[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2267932	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2300064	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2894407	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3752479	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3756911	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3756912	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3778019	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3798470	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3798472	1.00[CEU][hapmap];0.95[JPT][hapmap];0.92[YRI][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3798473	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3798474	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3819760	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.96[YRI][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3822970	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4598	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4713972	0.84[ASN][1000 genomes]
rs4713973	0.82[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs55829962	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56086408	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56763433	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57423505	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs57646047	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs58093537	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58153398	0.84[ASN][1000 genomes]
rs59104483	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs59955083	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60043926	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6457920	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6457921	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6457922	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6457923	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6457928	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6457929	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs67018593	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs67313027	0.84[ASN][1000 genomes]
rs67640018	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6899372	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6899421	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6899631	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6902076	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6902473	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6905347	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6905686	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6911877	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6912117	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6912982	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6913530	0.81[CEU][hapmap]
rs6913613	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6913693	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6913714	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6917489	0.84[ASN][1000 genomes]
rs6917951	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6917981	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6920166	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6923337	0.84[ASN][1000 genomes]
rs6926522	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6926796	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6927896	1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[CHD][hapmap];0.93[GIH][hapmap];0.91[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6928087	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6930496	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6936942	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6939445	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6941593	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73408850	0.84[ASN][1000 genomes]
rs73411055	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73413258	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73413267	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7344	0.80[CEU][hapmap]
rs7738604	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7742459	1.00[CEU][hapmap];0.85[JPT][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7743396	0.81[CEU][hapmap]
rs7745411	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7749358	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7752714	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7754363	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7763089	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7767377	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7769765	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7771028	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7772524	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7772800	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9296193	0.81[CEU][hapmap]
rs933236	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9462185	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9462186	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9462190	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9462193	1.00[CEU][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9470265	0.81[JPT][hapmap]
rs9470267	0.84[ASN][1000 genomes]
rs9470273	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9470280	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];0.95[JPT][hapmap];0.94[MEX][hapmap];0.91[TSI][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9470289	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9470291	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9470293	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9470294	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9470295	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9470296	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9470297	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9470300	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9470302	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9470304	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9654588	0.84[ASN][1000 genomes]
rs9767243	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9767778	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885806	chr6:36349890-36621178	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	103 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs11757842	TULP1	cis	cerebellum	SCAN
rs11757842	PNPLA1	cis	cerebellum	SCAN
rs11757842	C6orf1	cis	parietal	SCAN
rs11757842	KCTD20	cis	Skin Sun Exposed Lower leg	GTEx

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36409800-36412400	Flanking Active TSS	Primary hematopoietic stem cells	blood
2	chr6:36410400-36412400	Active TSS	Lung	lung
3	chr6:36410400-36412600	Active TSS	Left Ventricle	heart
4	chr6:36410600-36412800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr6:36411000-36412400	Flanking Active TSS	Primary B cells from cord blood	blood
6	chr6:36411200-36412400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
7	chr6:36411200-36412600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr6:36411200-36412800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr6:36411400-36412600	Flanking Active TSS	HUVEC	blood vessel
10	chr6:36411400-36412800	Flanking Active TSS	Primary T cells from cord blood	blood
11	chr6:36411400-36412800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
12	chr6:36411400-36412800	Flanking Active TSS	Fetal Brain Female	brain
13	chr6:36411600-36412400	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
14	chr6:36411600-36412400	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
15	chr6:36411600-36412400	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
16	chr6:36411600-36412600	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
17	chr6:36411600-36412600	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
18	chr6:36411600-36412600	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
19	chr6:36411600-36412600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr6:36411600-36412600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr6:36411600-36412600	Flanking Active TSS	Brain Germinal Matrix	brain
22	chr6:36411600-36412600	Flanking Active TSS	Duodenum Mucosa	Duodenum
23	chr6:36411600-36412600	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
24	chr6:36411600-36412600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
25	chr6:36411600-36412600	Flanking Active TSS	NH-A	brain
26	chr6:36411600-36412800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
27	chr6:36411600-36412800	Flanking Active TSS	Adipose Nuclei	Adipose
28	chr6:36411600-36412800	Flanking Active TSS	Hela-S3	cervix
29	chr6:36411600-36412800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
30	chr6:36411600-36439800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr6:36411600-36476400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr6:36411800-36412400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
33	chr6:36411800-36412400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr6:36411800-36412400	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
35	chr6:36411800-36412400	Flanking Active TSS	Sigmoid Colon	Sigmoid Colon
36	chr6:36411800-36412600	Flanking Active TSS	Primary T cells fromperipheralblood	blood
37	chr6:36411800-36412600	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
38	chr6:36411800-36412600	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
39	chr6:36411800-36412600	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
40	chr6:36411800-36412600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
41	chr6:36411800-36412600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr6:36411800-36412600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr6:36411800-36412600	Flanking Active TSS	Brain Angular Gyrus	brain
44	chr6:36411800-36412600	Flanking Active TSS	Brain Anterior Caudate	brain
45	chr6:36411800-36412600	Flanking Active TSS	Brain Cingulate Gyrus	brain
46	chr6:36411800-36412600	Flanking Active TSS	Brain Hippocampus Middle	brain
47	chr6:36411800-36412600	Flanking Active TSS	Colon Smooth Muscle	Colon
48	chr6:36411800-36412600	Flanking Active TSS	Fetal Heart	heart
49	chr6:36411800-36412600	Flanking Active TSS	Fetal Intestine Small	intestine
50	chr6:36411800-36412600	Flanking Active TSS	Fetal Kidney	kidney

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