Variant report

Variant	rs10947614
Chromosome Location	chr6:36573822-36573823
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:36572355..36575290-chr6:36687914..36691256,3	K562	blood:
2	chr6:36524472..36526029-chr6:36572608..36574439,2	MCF-7	breast:
3	chr6:36572562..36574759-chr6:36721579..36723537,2	K562	blood:
4	chr6:36510024..36516034-chr6:36569455..36577118,9	MCF-7	breast:
5	chr6:36571801..36574282-chr9:95049206..95050720,2	K562	blood:
6	chr6:36572659..36575634-chr6:36662126..36664637,2	K562	blood:
7	chr6:36573133..36574893-chr6:36998270..37000354,2	K562	blood:
8	chr6:36572662..36574979-chr6:36718444..36721087,2	K562	blood:
9	chr6:36571904..36574235-chr6:36647480..36649037,2	K562	blood:
10	chr6:36571240..36574099-chr6:36691059..36693876,2	K562	blood:
11	chr6:36513256..36515069-chr6:36571359..36573828,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000112079	Chromatin interaction

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs1061632	0.81[CEU][hapmap]
rs1076931	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10807169	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10947613	0.88[CEU][hapmap];0.83[CHB][hapmap];0.87[JPT][hapmap];0.82[ASN][1000 genomes]
rs10947615	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11756557	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11756969	0.91[CHB][hapmap];0.87[JPT][hapmap]
rs11757842	0.81[CEU][hapmap]
rs12153820	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12202732	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12208086	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12211825	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16888552	0.81[CEU][hapmap]
rs1812018	0.95[CHB][hapmap];0.87[JPT][hapmap];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1812019	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1812020	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2001101	0.97[EUR][1000 genomes]
rs2145048	0.95[CHB][hapmap];0.87[JPT][hapmap];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2146333	0.80[CEU][hapmap];0.81[JPT][hapmap]
rs2187827	0.82[CEU][hapmap]
rs2239807	0.81[CEU][hapmap]
rs2300064	0.81[CEU][hapmap]
rs4598	0.81[CEU][hapmap]
rs4713973	0.89[CEU][hapmap]
rs56144242	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61211228	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6905347	0.81[CEU][hapmap]
rs6911877	0.81[CEU][hapmap]
rs6913530	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6913714	0.81[CEU][hapmap]
rs6920166	0.81[CEU][hapmap]
rs6926522	0.81[CEU][hapmap]
rs6927896	0.81[CEU][hapmap]
rs6937430	0.80[CHB][hapmap]
rs72852338	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72852340	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7344	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7741888	0.86[CHB][hapmap];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7743396	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7747264	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7755461	0.83[JPT][hapmap];0.81[ASN][1000 genomes]
rs7759778	0.80[CEU][hapmap];0.87[CHB][hapmap];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7759933	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7760766	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7767296	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9296193	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9349001	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9357217	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9357218	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9357219	0.95[CHB][hapmap];0.87[JPT][hapmap];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9366907	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9366908	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9366909	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9368938	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9368939	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9368940	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9368943	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9380577	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9380578	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9380580	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9380582	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9394359	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9394360	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9394361	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9394362	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9394363	0.95[CHB][hapmap];0.87[JPT][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9394365	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9470280	0.81[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885806	chr6:36349890-36621178	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	103 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36565400-36574200	Genic enhancers	Fetal Heart	heart
2	chr6:36566600-36577400	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:36566800-36577800	Strong transcription	H9 Cell Line	embryonic stem cell
4	chr6:36566800-36582800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr6:36567000-36574400	Genic enhancers	A549	lung
6	chr6:36567000-36580400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
7	chr6:36567600-36578400	Genic enhancers	Liver	Liver
8	chr6:36567800-36575600	Strong transcription	HUES6 Cell Line	embryonic stem cell
9	chr6:36568000-36574200	Genic enhancers	Rectal Smooth Muscle	rectum
10	chr6:36568000-36575200	Strong transcription	H1 Cell Line	embryonic stem cell
11	chr6:36568000-36576200	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr6:36568000-36577800	Strong transcription	ES-I3 Cell Line	embryonic stem cell
13	chr6:36568000-36581400	Strong transcription	Primary monocytes fromperipheralblood	blood
14	chr6:36568200-36574200	Genic enhancers	Muscle Satellite Cultured Cells	--
15	chr6:36568200-36574200	Genic enhancers	Duodenum Smooth Muscle	Duodenum
16	chr6:36568200-36574400	Strong transcription	Colonic Mucosa	Colon
17	chr6:36568200-36575200	Strong transcription	Placenta Amnion	Placenta Amnion
18	chr6:36568200-36577400	Genic enhancers	NHEK	skin
19	chr6:36568200-36580200	Strong transcription	HUES48 Cell Line	embryonic stem cell
20	chr6:36568400-36575800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr6:36568600-36574000	Genic enhancers	Colon Smooth Muscle	Colon
22	chr6:36568600-36574200	Genic enhancers	Primary T killer memory cells from peripheral blood	blood
23	chr6:36568600-36576000	Genic enhancers	Osteobl	bone
24	chr6:36568600-36576200	Genic enhancers	Primary T killer naive cells fromperipheralblood	blood
25	chr6:36568600-36577600	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr6:36568600-36578000	Genic enhancers	HepG2	liver
27	chr6:36568600-36584600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr6:36568800-36574000	Strong transcription	Fetal Kidney	kidney
29	chr6:36568800-36575400	Genic enhancers	Duodenum Mucosa	Duodenum
30	chr6:36568800-36581200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr6:36569000-36581600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
32	chr6:36569200-36574200	Genic enhancers	Adipose Nuclei	Adipose
33	chr6:36569200-36574200	Strong transcription	K562	blood
34	chr6:36569200-36574800	Strong transcription	Rectal Mucosa Donor 29	rectum
35	chr6:36569200-36575600	Strong transcription	iPS-15b Cell Line	embryonic stem cell
36	chr6:36569400-36574000	Genic enhancers	Brain Germinal Matrix	brain
37	chr6:36569400-36574400	Strong transcription	Primary hematopoietic stem cells	blood
38	chr6:36569400-36576000	Genic enhancers	NHLF	lung
39	chr6:36569400-36576200	Genic enhancers	Primary T helper memory cells from peripheral blood 1	blood
40	chr6:36569400-36576600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr6:36569400-36581600	Strong transcription	Cortex derived primary cultured neurospheres	brain
42	chr6:36569600-36574000	Genic enhancers	Primary T cells from cord blood	blood
43	chr6:36569600-36574200	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
44	chr6:36569600-36575800	Weak transcription	Aorta	Aorta
45	chr6:36569600-36577400	Genic enhancers	Primary T helper memory cells from peripheral blood 2	blood
46	chr6:36569600-36577600	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
47	chr6:36569600-36581400	Strong transcription	HUES64 Cell Line	embryonic stem cell
48	chr6:36569600-36585000	Strong transcription	Fetal Thymus	thymus
49	chr6:36570000-36581800	Strong transcription	Monocytes-CD14+_RO01746	blood
50	chr6:36570200-36574200	Genic enhancers	Fetal Brain Female	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links