Variant report

Variant	rs6937430
Chromosome Location	chr6:36601897-36601898
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:36600535..36602963-chr6:36638081..36640016,2	MCF-7	breast:
2	chr6:36600489..36602110-chr6:36604280..36606519,2	K562	blood:
3	chr6:36593028..36595408-chr6:36598943..36601899,2	MCF-7	breast:
4	chr6:36561858..36565797-chr6:36601247..36605469,3	K562	blood:
5	chr6:36591755..36593263-chr6:36601284..36603461,2	MCF-7	breast:
6	chr6:36598994..36606227-chr6:36643995..36648555,17	MCF-7	breast:
7	chr6:36601808..36603429-chr6:36645525..36647356,2	K562	blood:
8	chr6:36589954..36591694-chr6:36600898..36603288,2	K562	blood:
9	chr6:36581748..36603537-chr6:36641861..36652365,77	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000263894	Chromatin interaction
ENSG00000112081	Chromatin interaction
ENSG00000124762	Chromatin interaction

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10214849	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10223366	0.91[EUR][1000 genomes]
rs10807169	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10947613	0.84[CEU][hapmap];0.95[CHB][hapmap];0.83[JPT][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10947614	0.80[CHB][hapmap]
rs10947615	0.83[CHB][hapmap]
rs11756969	0.85[CEU][hapmap];0.83[JPT][hapmap]
rs12153820	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12197590	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1406945	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs1812018	0.85[CEU][hapmap];0.83[CHB][hapmap];0.83[JPT][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1812019	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1812020	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2145048	0.85[CEU][hapmap];0.83[CHB][hapmap];0.83[JPT][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4713987	0.92[EUR][1000 genomes]
rs4713988	0.91[EUR][1000 genomes]
rs56144242	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs60627328	0.92[EUR][1000 genomes]
rs61211228	0.87[EUR][1000 genomes]
rs671516	0.88[EUR][1000 genomes]
rs73410251	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7738559	0.80[AMR][1000 genomes]
rs7738561	0.80[AMR][1000 genomes]
rs7741888	0.85[CEU][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7747264	0.85[EUR][1000 genomes]
rs7755461	0.95[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7759546	0.87[EUR][1000 genomes]
rs7759778	0.86[CEU][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7759933	0.87[EUR][1000 genomes]
rs7760766	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7767296	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7771547	0.81[EUR][1000 genomes]
rs9296192	0.82[EUR][1000 genomes]
rs9296193	0.80[EUR][1000 genomes]
rs9357217	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9357219	0.85[CEU][hapmap];0.83[CHB][hapmap];0.83[JPT][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9366907	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9366908	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9366909	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9366911	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs9368938	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9368940	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9368942	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs9380577	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9380578	0.81[EUR][1000 genomes]
rs9380580	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9380582	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9394359	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9394360	0.80[AMR][1000 genomes]
rs9394362	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9394363	0.85[CEU][hapmap];0.83[CHB][hapmap];0.83[JPT][hapmap];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885806	chr6:36349890-36621178	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	103 gene(s)	inside rSNPs	diseases
2	nsv1031191	chr6:36588974-36718015	Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv538201	chr6:36588974-36718015	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36581400-36604400	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr6:36582800-36610800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr6:36595800-36602000	Weak transcription	Gastric	stomach
4	chr6:36596000-36602000	Weak transcription	HSMM	muscle
5	chr6:36597000-36603000	Enhancers	Fetal Muscle Leg	muscle
6	chr6:36597400-36602000	Weak transcription	Fetal Kidney	kidney
7	chr6:36598800-36602400	Enhancers	Fetal Heart	heart
8	chr6:36599600-36604400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr6:36599800-36604600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr6:36599800-36604600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr6:36600000-36605200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr6:36601000-36602400	Enhancers	Duodenum Mucosa	Duodenum
13	chr6:36601000-36602400	Enhancers	Fetal Intestine Small	intestine
14	chr6:36601000-36603400	Enhancers	Stomach Mucosa	stomach
15	chr6:36601000-36605800	Enhancers	Fetal Muscle Trunk	muscle
16	chr6:36601200-36602200	Enhancers	Fetal Intestine Large	intestine
17	chr6:36601200-36602400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr6:36601200-36602400	Enhancers	Fetal Lung	lung
19	chr6:36601200-36602400	Enhancers	Pancreas	Pancrea
20	chr6:36601200-36602400	Enhancers	Rectal Mucosa Donor 31	rectum
21	chr6:36601200-36602400	Enhancers	Sigmoid Colon	Sigmoid Colon
22	chr6:36601200-36602400	Enhancers	HUVEC	blood vessel
23	chr6:36601200-36602400	Enhancers	NH-A	brain
24	chr6:36601200-36602600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr6:36601200-36603000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr6:36601200-36603000	Enhancers	Colonic Mucosa	Colon
27	chr6:36601200-36603200	Enhancers	Rectal Mucosa Donor 29	rectum
28	chr6:36601200-36603400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr6:36601200-36605800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr6:36601400-36602200	Enhancers	Fetal Stomach	stomach
31	chr6:36601400-36602400	Enhancers	Muscle Satellite Cultured Cells	--
32	chr6:36601400-36602400	Enhancers	Skeletal Muscle Female	skeletal muscle
33	chr6:36601400-36602600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr6:36601400-36602800	Enhancers	Adipose Nuclei	Adipose
35	chr6:36601400-36603000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr6:36601400-36603400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr6:36601600-36602000	Enhancers	Duodenum Smooth Muscle	Duodenum
38	chr6:36601600-36602200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr6:36601600-36602400	Enhancers	Colon Smooth Muscle	Colon
40	chr6:36601600-36602400	Enhancers	Placenta	Placenta
41	chr6:36601600-36602400	Enhancers	Left Ventricle	heart
42	chr6:36601600-36602400	Enhancers	Rectal Smooth Muscle	rectum
43	chr6:36601600-36602400	Enhancers	Right Atrium	heart
44	chr6:36601600-36602400	Enhancers	Skeletal Muscle Male	skeletal muscle
45	chr6:36601600-36602400	Enhancers	HSMMtube	muscle
46	chr6:36601600-36602600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr6:36601600-36602600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr6:36601600-36602800	Enhancers	Liver	Liver
49	chr6:36601600-36603600	Enhancers	Cortex derived primary cultured neurospheres	brain
50	chr6:36601800-36602000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin

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