Variant report

Variant	rs11756969
Chromosome Location	chr6:36580400-36580401
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:36577655..36580649-chr6:36645299..36647477,2	MCF-7	breast:
2	chr6:36577436..36580901-chr6:36648470..36651354,3	K562	blood:
3	chr6:36579421..36589066-chr6:36722460..36728572,25	MCF-7	breast:
4	chr6:36578752..36581618-chr6:36589412..36591182,2	K562	blood:
5	chr6:36539071..36541420-chr6:36578039..36580553,2	K562	blood:
6	chr6:36578466..36580870-chr6:36647924..36649824,2	MCF-7	breast:
7	chr6:36574853..36581451-chr6:36644915..36649997,7	K562	blood:
8	chr6:36580200..36582709-chr6:36638711..36641667,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000263894	Chromatin interaction
ENSG00000251864	Chromatin interaction
ENSG00000124772	Chromatin interaction
ENSG00000213500	Chromatin interaction
ENSG00000124762	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10214849	0.85[CEU][hapmap];0.85[CHD][hapmap];0.82[JPT][hapmap];0.86[TSI][hapmap]
rs10947613	0.80[ASW][hapmap];0.87[CHD][hapmap];0.91[JPT][hapmap];0.82[LWK][hapmap];0.84[TSI][hapmap]
rs10947614	0.91[CHB][hapmap];0.87[JPT][hapmap]
rs10947615	0.91[CHB][hapmap];0.90[JPT][hapmap]
rs1406945	0.85[CEU][hapmap]
rs1812018	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs2145048	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs6913530	0.91[CHB][hapmap];0.92[CHD][hapmap];0.84[GIH][hapmap];0.91[JPT][hapmap];0.92[TSI][hapmap]
rs6937430	0.85[CEU][hapmap];0.83[JPT][hapmap]
rs7344	0.91[CHB][hapmap];0.95[CHD][hapmap];0.84[GIH][hapmap];0.91[JPT][hapmap];0.92[TSI][hapmap]
rs7741888	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];0.91[JPT][hapmap];1.00[TSI][hapmap]
rs7743396	0.83[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];0.84[GIH][hapmap];0.91[JPT][hapmap];0.92[TSI][hapmap]
rs7755461	0.95[JPT][hapmap];0.90[YRI][hapmap]
rs7759778	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap]
rs9296193	0.91[CHB][hapmap];0.92[CHD][hapmap];0.84[GIH][hapmap];0.91[JPT][hapmap];0.89[TSI][hapmap]
rs9357219	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs9366911	0.85[CEU][hapmap]
rs9368942	0.85[CEU][hapmap]
rs9394363	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.97[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885806	chr6:36349890-36621178	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	103 gene(s)	inside rSNPs	diseases
2	esv2094938	chr6:36580396-36580401	Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:140 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36566800-36582800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:36567000-36580400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
3	chr6:36568000-36581400	Strong transcription	Primary monocytes fromperipheralblood	blood
4	chr6:36568600-36584600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:36568800-36581200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr6:36569000-36581600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
7	chr6:36569400-36581600	Strong transcription	Cortex derived primary cultured neurospheres	brain
8	chr6:36569600-36581400	Strong transcription	HUES64 Cell Line	embryonic stem cell
9	chr6:36569600-36585000	Strong transcription	Fetal Thymus	thymus
10	chr6:36570000-36581800	Strong transcription	Monocytes-CD14+_RO01746	blood
11	chr6:36570200-36581200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr6:36570400-36581600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr6:36570400-36584800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr6:36570600-36582000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr6:36571000-36581600	Strong transcription	Primary B cells from cord blood	blood
16	chr6:36571200-36581600	Strong transcription	Primary neutrophils fromperipheralblood	blood
17	chr6:36571200-36582200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr6:36571600-36585000	Strong transcription	Thymus	Thymus
19	chr6:36571800-36582200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr6:36572000-36581800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr6:36572000-36583200	Strong transcription	Fetal Stomach	stomach
22	chr6:36572600-36580400	Strong transcription	HUVEC	blood vessel
23	chr6:36572600-36581400	Strong transcription	Dnd41	blood
24	chr6:36572600-36582200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr6:36573200-36581200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr6:36573600-36582800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr6:36574000-36581600	Strong transcription	Brain Germinal Matrix	brain
28	chr6:36574200-36580400	Strong transcription	HSMM	muscle
29	chr6:36574600-36581200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr6:36575200-36580400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr6:36575400-36581600	Strong transcription	Fetal Muscle Trunk	muscle
32	chr6:36575600-36583200	Weak transcription	Hela-S3	cervix
33	chr6:36576000-36580400	Strong transcription	H1 Cell Line	embryonic stem cell
34	chr6:36576000-36580400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr6:36576000-36580800	Weak transcription	Fetal Brain Male	brain
36	chr6:36576000-36581000	Strong transcription	Osteobl	bone
37	chr6:36576000-36581400	Strong transcription	HUES6 Cell Line	embryonic stem cell
38	chr6:36576000-36581400	Strong transcription	Primary T cells from cord blood	blood
39	chr6:36576000-36581600	Strong transcription	Fetal Lung	lung
40	chr6:36576000-36581800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr6:36576200-36581400	Strong transcription	Sigmoid Colon	Sigmoid Colon
42	chr6:36576200-36581800	Strong transcription	Lung	lung
43	chr6:36576200-36586400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
44	chr6:36576200-36590800	Weak transcription	Right Atrium	heart
45	chr6:36576600-36580400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr6:36576600-36581600	Strong transcription	Brain Inferior Temporal Lobe	brain
47	chr6:36576600-36581600	Strong transcription	Fetal Muscle Leg	muscle
48	chr6:36576600-36583200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
49	chr6:36576600-36584600	Weak transcription	Colonic Mucosa	Colon
50	chr6:36576600-36586800	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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