Variant report

Variant	rs7755461
Chromosome Location	chr6:36574832-36574833
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:36460967..36463538-chr6:36574262..36576838,2	MCF-7	breast:
2	chr6:36572355..36575290-chr6:36687914..36691256,3	K562	blood:
3	chr6:36510024..36516034-chr6:36569455..36577118,9	MCF-7	breast:
4	chr6:36572659..36575634-chr6:36662126..36664637,2	K562	blood:
5	chr6:36573133..36574893-chr6:36998270..37000354,2	K562	blood:
6	chr6:36573948..36575583-chr6:36736532..36738337,2	K562	blood:
7	chr6:36572662..36574979-chr6:36718444..36721087,2	K562	blood:

Variant related genes	Relation type
ENSG00000112079	Chromatin interaction

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10214849	0.95[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10223366	0.92[EUR][1000 genomes]
rs10807169	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10947613	0.95[CHB][hapmap];0.95[JPT][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10947614	0.83[JPT][hapmap];0.81[ASN][1000 genomes]
rs10947615	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs11756969	0.95[JPT][hapmap];0.90[YRI][hapmap]
rs12153820	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12197590	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12208086	0.81[ASN][1000 genomes]
rs12211825	0.80[ASN][1000 genomes]
rs1406945	0.95[CEU][hapmap];0.92[EUR][1000 genomes]
rs1812018	0.83[CHB][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1812019	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1812020	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2145048	0.83[CHB][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4713987	0.92[EUR][1000 genomes]
rs4713988	0.89[EUR][1000 genomes]
rs56144242	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs60627328	0.92[EUR][1000 genomes]
rs61211228	0.88[EUR][1000 genomes]
rs671516	0.90[EUR][1000 genomes]
rs6913530	0.86[JPT][hapmap]
rs6937430	0.95[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73410251	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7344	0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs7738559	0.82[AMR][1000 genomes]
rs7738561	0.82[AMR][1000 genomes]
rs7741888	0.86[JPT][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7743396	0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs7747264	0.85[EUR][1000 genomes]
rs7759546	0.83[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs7759778	0.81[CEU][hapmap];0.86[JPT][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7759933	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7760766	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7767296	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7771547	0.82[EUR][1000 genomes]
rs9296193	0.86[JPT][hapmap]
rs9357217	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9357219	0.83[CHB][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9366907	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9366908	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9366909	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9366911	0.95[CEU][hapmap];0.93[EUR][1000 genomes]
rs9368938	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9368940	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9368942	0.95[CEU][hapmap];0.92[EUR][1000 genomes]
rs9368943	0.81[ASN][1000 genomes]
rs9380577	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9380578	0.81[EUR][1000 genomes]
rs9380580	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9380582	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9394359	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9394360	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9394362	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9394363	0.83[CHB][hapmap];0.95[JPT][hapmap];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885806	chr6:36349890-36621178	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	103 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36566600-36577400	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:36566800-36577800	Strong transcription	H9 Cell Line	embryonic stem cell
3	chr6:36566800-36582800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr6:36567000-36580400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
5	chr6:36567600-36578400	Genic enhancers	Liver	Liver
6	chr6:36567800-36575600	Strong transcription	HUES6 Cell Line	embryonic stem cell
7	chr6:36568000-36575200	Strong transcription	H1 Cell Line	embryonic stem cell
8	chr6:36568000-36576200	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr6:36568000-36577800	Strong transcription	ES-I3 Cell Line	embryonic stem cell
10	chr6:36568000-36581400	Strong transcription	Primary monocytes fromperipheralblood	blood
11	chr6:36568200-36575200	Strong transcription	Placenta Amnion	Placenta Amnion
12	chr6:36568200-36577400	Genic enhancers	NHEK	skin
13	chr6:36568200-36580200	Strong transcription	HUES48 Cell Line	embryonic stem cell
14	chr6:36568400-36575800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr6:36568600-36576000	Genic enhancers	Osteobl	bone
16	chr6:36568600-36576200	Genic enhancers	Primary T killer naive cells fromperipheralblood	blood
17	chr6:36568600-36577600	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr6:36568600-36578000	Genic enhancers	HepG2	liver
19	chr6:36568600-36584600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr6:36568800-36575400	Genic enhancers	Duodenum Mucosa	Duodenum
21	chr6:36568800-36581200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr6:36569000-36581600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
23	chr6:36569200-36575600	Strong transcription	iPS-15b Cell Line	embryonic stem cell
24	chr6:36569400-36576000	Genic enhancers	NHLF	lung
25	chr6:36569400-36576200	Genic enhancers	Primary T helper memory cells from peripheral blood 1	blood
26	chr6:36569400-36576600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr6:36569400-36581600	Strong transcription	Cortex derived primary cultured neurospheres	brain
28	chr6:36569600-36575800	Weak transcription	Aorta	Aorta
29	chr6:36569600-36577400	Genic enhancers	Primary T helper memory cells from peripheral blood 2	blood
30	chr6:36569600-36577600	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
31	chr6:36569600-36581400	Strong transcription	HUES64 Cell Line	embryonic stem cell
32	chr6:36569600-36585000	Strong transcription	Fetal Thymus	thymus
33	chr6:36570000-36581800	Strong transcription	Monocytes-CD14+_RO01746	blood
34	chr6:36570200-36581200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr6:36570400-36577600	Genic enhancers	Primary T helper cells PMA-I stimulated	--
36	chr6:36570400-36577800	Genic enhancers	Primary T helper naive cells from peripheral blood	blood
37	chr6:36570400-36581600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr6:36570400-36584800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
39	chr6:36570600-36577800	Genic enhancers	Primary T helper cells fromperipheralblood	blood
40	chr6:36570600-36582000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr6:36570800-36580200	Strong transcription	NH-A	brain
42	chr6:36571000-36575800	Strong transcription	Ovary	ovary
43	chr6:36571000-36581600	Strong transcription	Primary B cells from cord blood	blood
44	chr6:36571200-36581600	Strong transcription	Primary neutrophils fromperipheralblood	blood
45	chr6:36571200-36582200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
46	chr6:36571400-36576000	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
47	chr6:36571400-36576000	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr6:36571400-36577800	Genic enhancers	Rectal Mucosa Donor 31	rectum
49	chr6:36571400-36577800	Genic enhancers	HMEC	breast
50	chr6:36571600-36576400	Strong transcription	Brain Anterior Caudate	brain

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