Variant report

Variant	rs12208086
Chromosome Location	chr6:36586070-36586071
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:16)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:16 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:36581615..36586295-chr6:36690989..36695468,6	MCF-7	breast:
2	chr6:36560147..36563115-chr6:36583290..36586595,4	MCF-7	breast:
3	chr6:36585115..36587605-chr6:36611559..36613205,2	K562	blood:
4	chr6:36386854..36389830-chr6:36585117..36586872,2	MCF-7	breast:
5	chr6:36583476..36586327-chr6:36590404..36592946,3	K562	blood:
6	chr6:36579421..36589066-chr6:36722460..36728572,25	MCF-7	breast:
7	chr6:36584907..36586917-chr6:36625809..36627593,2	K562	blood:
8	chr6:36581617..36586332-chr6:36722874..36726727,8	MCF-7	breast:
9	chr6:36585463..36588100-chr6:36589311..36592399,3	MCF-7	breast:
10	chr6:36584982..36587013-chr6:36719962..36722309,3	MCF-7	breast:
11	chr6:36581763..36584734-chr6:36584798..36588303,5	K562	blood:
12	chr6:36584813..36586612-chr6:36830505..36832911,2	K562	blood:
13	chr6:36578336..36580257-chr6:36585144..36586920,2	MCF-7	breast:
14	chr6:36581224..36597272-chr6:36642199..36659412,120	MCF-7	breast:
15	chr6:36584679..36586444-chr6:36633785..36636710,2	MCF-7	breast:
16	chr6:36581748..36603537-chr6:36641861..36652365,77	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000263894	Chromatin interaction
ENSG00000112081	Chromatin interaction
ENSG00000124772	Chromatin interaction
ENSG00000124762	Chromatin interaction

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs1076931	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10807169	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10947614	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10947615	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11756557	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12153820	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12202732	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12211825	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1812018	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1812019	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1812020	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2001101	0.92[EUR][1000 genomes]
rs2145048	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56144242	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61211228	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6913530	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72852338	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72852340	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7344	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7741888	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7743396	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7747264	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7755461	0.81[ASN][1000 genomes]
rs7759778	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7759933	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7760766	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7767296	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9296193	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9349001	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9357217	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9357218	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9357219	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9366907	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9366908	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9366909	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9368938	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9368939	0.89[EUR][1000 genomes]
rs9368940	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9368943	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9380577	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9380578	0.82[ASN][1000 genomes]
rs9380580	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9380582	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9394361	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9394362	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9394363	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9394365	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885806	chr6:36349890-36621178	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	103 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36576200-36586400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:36576200-36590800	Weak transcription	Right Atrium	heart
3	chr6:36576600-36586800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr6:36577400-36595200	Weak transcription	Psoas Muscle	Psoas
5	chr6:36577800-36586400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr6:36577800-36587800	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr6:36577800-36591000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr6:36577800-36595200	Weak transcription	Small Intestine	intestine
9	chr6:36580000-36586400	Weak transcription	K562	blood
10	chr6:36580200-36586600	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr6:36580200-36590800	Weak transcription	NHLF	lung
12	chr6:36580200-36591000	Weak transcription	Ovary	ovary
13	chr6:36580200-36591000	Weak transcription	NH-A	brain
14	chr6:36580200-36599200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr6:36580400-36586200	Weak transcription	Spleen	Spleen
16	chr6:36580400-36586400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr6:36580400-36587000	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr6:36580400-36590800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr6:36580400-36591000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr6:36580400-36593000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr6:36581200-36586200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr6:36581200-36586400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr6:36581400-36586200	Weak transcription	Aorta	Aorta
24	chr6:36581400-36586600	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr6:36581400-36586600	Weak transcription	HepG2	liver
26	chr6:36581400-36588200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr6:36581400-36590800	Weak transcription	Primary hematopoietic stem cells	blood
28	chr6:36581400-36590800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr6:36581400-36591000	Weak transcription	Primary T cells from cord blood	blood
30	chr6:36581400-36591000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
31	chr6:36581400-36591000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
32	chr6:36581400-36591000	Weak transcription	Fetal Kidney	kidney
33	chr6:36581400-36591000	Weak transcription	Dnd41	blood
34	chr6:36581400-36604400	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr6:36581600-36586200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr6:36581600-36586400	Weak transcription	GM12878-XiMat	blood
37	chr6:36581600-36589600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
38	chr6:36581600-36590400	Weak transcription	Duodenum Smooth Muscle	Duodenum
39	chr6:36581600-36591000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
40	chr6:36581600-36591200	Weak transcription	Fetal Lung	lung
41	chr6:36581800-36586400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr6:36581800-36586800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr6:36581800-36590800	Weak transcription	Primary T cells fromperipheralblood	blood
44	chr6:36582000-36591200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr6:36582200-36586800	Enhancers	Liver	Liver
46	chr6:36582200-36595400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr6:36582800-36610800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr6:36583000-36590800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
49	chr6:36583200-36587200	Enhancers	Monocytes-CD14+_RO01746	blood
50	chr6:36583400-36590800	Weak transcription	Primary T helper cells fromperipheralblood	blood

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