Variant report

Variant	rs72852338
Chromosome Location	chr6:36554240-36554241
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:36546247..36549201-chr6:36553046..36554863,2	K562	blood:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs1076931	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10807169	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10947614	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10947615	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11756557	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12153820	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12202732	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12208086	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12211825	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1812018	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1812019	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1812020	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2001101	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2145048	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56144242	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61211228	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6913530	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72852340	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7344	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7738559	0.86[ASN][1000 genomes]
rs7738561	0.85[ASN][1000 genomes]
rs7741888	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7743396	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7747264	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7759778	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7759933	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7760766	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7767296	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9296193	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9349001	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9357217	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9357218	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9357219	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9366907	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9366908	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9366909	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9368938	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9368939	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9368940	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9368943	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9380577	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9380578	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9380580	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9380582	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9394359	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9394360	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9394361	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9394362	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9394363	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9394365	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885806	chr6:36349890-36621178	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	103 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36551600-36558000	Weak transcription	NHDF-Ad	bronchial
2	chr6:36551600-36559600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr6:36551600-36560000	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr6:36551600-36560600	Weak transcription	Fetal Intestine Small	intestine
5	chr6:36552400-36554600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr6:36553400-36557400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr6:36553400-36558000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr6:36553400-36558000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr6:36553400-36558000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr6:36553400-36558000	Weak transcription	HSMMtube	muscle
11	chr6:36553400-36558000	Weak transcription	NH-A	brain
12	chr6:36553400-36561000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr6:36553800-36558000	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr6:36553800-36558000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr6:36553800-36558000	Weak transcription	HSMM	muscle
16	chr6:36553800-36558000	Weak transcription	Osteobl	bone
17	chr6:36553800-36561000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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