Variant report

Variant	rs9368943
Chromosome Location	chr6:36566575-36566576
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:17)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:17 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:36564984..36567276-chr6:36718585..36720409,2	K562	blood:
2	chr6:36455952..36458336-chr6:36565013..36567157,3	K562	blood:
3	chr6:36564389..36567753-chr6:36701819..36705638,3	K562	blood:
4	chr6:36350010..36352729-chr6:36563870..36566788,2	MCF-7	breast:
5	chr6:36485725..36489611-chr6:36564502..36569301,6	K562	blood:
6	chr17:39845192..39847447-chr6:36564537..36567520,2	K562	blood:
7	chr6:36507286..36509836-chr6:36564667..36567280,2	MCF-7	breast:
8	chr6:36510007..36526277-chr6:36558145..36566762,35	K562	blood:
9	chr6:36403741..36414959-chr6:36560215..36569964,50	K562	blood:
10	chr6:36565352..36567022-chr6:36722570..36724829,2	MCF-7	breast:
11	chr6:36564863..36566832-chr6:36646275..36648245,3	MCF-7	breast:
12	chr6:36511392..36518322-chr6:36560440..36567216,21	MCF-7	breast:
13	chr6:36564965..36566976-chr6:36648126..36649999,2	K562	blood:
14	chr6:36511832..36520020-chr6:36560637..36566762,23	K562	blood:
15	chr6:36485725..36489051-chr6:36564502..36569279,5	K562	blood:
16	chr6:36559895..36571260-chr6:36642384..36648914,19	MCF-7	breast:
17	chr6:36402372..36404513-chr6:36565857..36568827,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000112078	Chromatin interaction
ENSG00000112079	Chromatin interaction
ENSG00000173812	Chromatin interaction
ENSG00000220349	Chromatin interaction
ENSG00000179165	Chromatin interaction
ENSG00000124762	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs1076931	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10807169	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10947614	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10947615	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11756557	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12153820	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12202732	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12208086	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12211825	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1812018	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1812019	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1812020	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2001101	0.97[EUR][1000 genomes]
rs2145048	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56144242	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61211228	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6913530	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72852338	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72852340	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7344	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7741888	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7743396	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7747264	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7755461	0.81[ASN][1000 genomes]
rs7759778	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7759933	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7760766	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7767296	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9296193	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9349001	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9357217	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9357218	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9357219	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9366907	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9366908	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9366909	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9368938	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9368939	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9368940	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9380577	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9380578	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9380580	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9380582	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9394359	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9394360	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9394361	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9394362	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9394363	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9394365	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885806	chr6:36349890-36621178	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	103 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36561200-36566600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:36562200-36568600	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
3	chr6:36562200-36569600	Transcr. at gene 5' and 3'	Primary T helper naive cells fromperipheralblood	blood
4	chr6:36562400-36569000	Transcr. at gene 5' and 3'	iPS-20b Cell Line	embryonic stem cell
5	chr6:36562600-36567000	Transcr. at gene 5' and 3'	Fetal Lung	lung
6	chr6:36562600-36567000	Transcr. at gene 5' and 3'	A549	lung
7	chr6:36562600-36570400	Transcr. at gene 5' and 3'	Dnd41	blood
8	chr6:36562600-36571800	Transcr. at gene 5' and 3'	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr6:36562800-36566800	Transcr. at gene 5' and 3'	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr6:36562800-36566800	Transcr. at gene 5' and 3'	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr6:36562800-36567800	Transcr. at gene 5' and 3'	HUES6 Cell Line	embryonic stem cell
12	chr6:36562800-36568200	Transcr. at gene 5' and 3'	HUES48 Cell Line	embryonic stem cell
13	chr6:36562800-36568200	Transcr. at gene 5' and 3'	Muscle Satellite Cultured Cells	--
14	chr6:36562800-36568200	Transcr. at gene 5' and 3'	NHEK	skin
15	chr6:36562800-36568600	Transcr. at gene 5' and 3'	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr6:36562800-36568600	Transcr. at gene 5' and 3'	iPS-18 Cell Line	embryonic stem cell
17	chr6:36562800-36569000	Transcr. at gene 5' and 3'	HUES64 Cell Line	embryonic stem cell
18	chr6:36563000-36569400	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr6:36563000-36569600	Transcr. at gene 5' and 3'	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr6:36563200-36566800	Transcr. at gene 5' and 3'	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr6:36563200-36568600	Transcr. at gene 5' and 3'	Osteobl	bone
22	chr6:36563400-36566600	Transcr. at gene 5' and 3'	Fetal Thymus	thymus
23	chr6:36563600-36567200	Transcr. at gene 5' and 3'	ES-UCSF4 Cell Line	embryonic stem cell
24	chr6:36563800-36566800	Transcr. at gene 5' and 3'	Primary mononuclear cells fromperipheralblood	Blood
25	chr6:36563800-36567000	Transcr. at gene 5' and 3'	H1 Cell Line	embryonic stem cell
26	chr6:36564000-36567400	Transcr. at gene 5' and 3'	iPS-15b Cell Line	embryonic stem cell
27	chr6:36564000-36568600	Transcr. at gene 5' and 3'	Primary T helper naive cells from peripheral blood	blood
28	chr6:36564000-36569200	Transcr. at gene 5' and 3'	HMEC	breast
29	chr6:36564000-36570400	Transcr. at gene 5' and 3'	Primary T regulatory cells fromperipheralblood	blood
30	chr6:36564000-36571600	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
31	chr6:36564200-36566600	Transcr. at gene 5' and 3'	Cortex derived primary cultured neurospheres	brain
32	chr6:36564200-36566800	Transcr. at gene 5' and 3'	Primary hematopoietic stem cells short term culture	blood
33	chr6:36564200-36567200	Transcr. at gene 5' and 3'	K562	blood
34	chr6:36564200-36568000	Transcr. at gene 5' and 3'	HSMM	muscle
35	chr6:36564200-36568200	Transcr. at gene 5' and 3'	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr6:36564200-36568600	Transcr. at gene 5' and 3'	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr6:36564200-36568600	Transcr. at gene 5' and 3'	NH-A	brain
38	chr6:36564400-36566600	Transcr. at gene 5' and 3'	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr6:36564400-36567200	Transcr. at gene 5' and 3'	Fetal Kidney	kidney
40	chr6:36564400-36567400	Transcr. at gene 5' and 3'	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr6:36564400-36568000	Transcr. at gene 5' and 3'	Hela-S3	cervix
42	chr6:36564400-36568600	Transcr. at gene 5' and 3'	Primary T cells fromperipheralblood	blood
43	chr6:36564400-36568600	Transcr. at gene 5' and 3'	HepG2	liver
44	chr6:36564400-36569400	Transcr. at gene 5' and 3'	Primary T helper memory cells from peripheral blood 1	blood
45	chr6:36564400-36569400	Transcr. at gene 5' and 3'	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr6:36564400-36569400	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr6:36564400-36569600	Transcr. at gene 5' and 3'	Primary T cells from cord blood	blood
48	chr6:36564400-36569600	Transcr. at gene 5' and 3'	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr6:36564400-36569800	Transcr. at gene 5' and 3'	Breast Myoepithelial Primary Cells	Breast
50	chr6:36564400-36570400	Transcr. at gene 5' and 3'	Primary T helper cells PMA-I stimulated	--

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