Variant report

Variant	rs9394361
Chromosome Location	chr6:36551370-36551371
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:36550929..36553081-chr6:36645589..36647335,2	K562	blood:

Variant related genes	Relation type
ENSG00000124762	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs1076931	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10807169	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10947614	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10947615	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11756557	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12153820	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12202732	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12208086	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12211825	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1812018	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1812019	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1812020	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2001101	0.97[EUR][1000 genomes]
rs2145048	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56144242	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61211228	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6913530	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72852338	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72852340	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7344	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7738559	0.86[ASN][1000 genomes]
rs7738561	0.85[ASN][1000 genomes]
rs7741888	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7743396	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7747264	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7759778	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7759933	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7760766	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7767296	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9296193	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9349001	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9357217	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9357218	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9357219	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9366907	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9366908	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9366909	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9368938	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9368939	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9368940	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9368943	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9380577	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9380578	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9380580	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9380582	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9394359	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9394360	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9394362	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9394363	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9394365	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885806	chr6:36349890-36621178	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	103 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36548000-36553000	Weak transcription	HSMM	muscle
2	chr6:36548000-36553000	Weak transcription	HSMMtube	muscle
3	chr6:36548000-36553000	Weak transcription	NH-A	brain
4	chr6:36548200-36551400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr6:36548200-36551600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr6:36548200-36553000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr6:36550200-36552400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr6:36551200-36551400	Enhancers	Primary neutrophils fromperipheralblood	blood
9	chr6:36551200-36551400	Flanking Bivalent TSS/Enh	Primary T cells fromperipheralblood	blood
10	chr6:36551200-36551400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
11	chr6:36551200-36551400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr6:36551200-36551400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr6:36551200-36551400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr6:36551200-36551400	Flanking Active TSS	Adipose Nuclei	Adipose
15	chr6:36551200-36551400	Flanking Active TSS	Placenta	Placenta
16	chr6:36551200-36551400	Flanking Active TSS	Osteobl	bone
17	chr6:36551200-36551600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr6:36551200-36551600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr6:36551200-36551600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr6:36551200-36551600	Enhancers	Primary B cells from cord blood	blood
21	chr6:36551200-36551600	Active TSS	Primary B cells from peripheral blood	blood
22	chr6:36551200-36551600	Active TSS	Primary T cells from cord blood	blood
23	chr6:36551200-36551600	Active TSS	Primary T helper naive cells fromperipheralblood	blood
24	chr6:36551200-36551600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
25	chr6:36551200-36551600	Active TSS	Primary T helper cells fromperipheralblood	blood
26	chr6:36551200-36551600	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr6:36551200-36551600	Active TSS	Muscle Satellite Cultured Cells	--
28	chr6:36551200-36551600	Active TSS	Brain Angular Gyrus	brain
29	chr6:36551200-36551600	Active TSS	Brain Cingulate Gyrus	brain
30	chr6:36551200-36551600	Active TSS	Brain Hippocampus Middle	brain
31	chr6:36551200-36551600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
32	chr6:36551200-36551600	Active TSS	Brain Substantia Nigra	brain
33	chr6:36551200-36551600	Active TSS	Duodenum Mucosa	Duodenum
34	chr6:36551200-36551600	Enhancers	Fetal Brain Male	brain
35	chr6:36551200-36551600	Active TSS	Fetal Intestine Large	intestine
36	chr6:36551200-36551600	Active TSS	Fetal Intestine Small	intestine
37	chr6:36551200-36551600	Active TSS	Fetal Kidney	kidney
38	chr6:36551200-36551600	Bivalent/Poised TSS	Fetal Stomach	stomach
39	chr6:36551200-36551600	Active TSS	Fetal Thymus	thymus
40	chr6:36551200-36551600	Active TSS	Ovary	ovary
41	chr6:36551200-36551600	Active TSS	Stomach Smooth Muscle	stomach
42	chr6:36551200-36551600	Active TSS	Thymus	Thymus
43	chr6:36551200-36551600	Active TSS	NHDF-Ad	bronchial
44	chr6:36551200-36551600	Enhancers	NHEK	skin
45	chr6:36551200-36551600	Active TSS	NHLF	lung
46	chr6:36551200-36551800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr6:36551200-36551800	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr6:36551200-36551800	Active TSS	Cortex derived primary cultured neurospheres	brain
49	chr6:36551200-36551800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr6:36551200-36551800	Active TSS	Primary mononuclear cells fromperipheralblood	Blood

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