Variant report

Variant	rs12211825
Chromosome Location	chr6:36588140-36588141
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:36586688..36589021-chr6:36723854..36726833,2	MCF-7	breast:
2	chr6:36583162..36585215-chr6:36586177..36589221,3	MCF-7	breast:
3	chr6:36579421..36589066-chr6:36722460..36728572,25	MCF-7	breast:
4	chr6:36586905..36589063-chr6:36691247..36692772,2	MCF-7	breast:
5	chr6:36581763..36584734-chr6:36584798..36588303,5	K562	blood:
6	chr6:36581224..36597272-chr6:36642199..36659412,120	MCF-7	breast:
7	chr6:36587328..36589112-chr6:36683598..36686485,2	MCF-7	breast:
8	chr6:36581748..36603537-chr6:36641861..36652365,77	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000124762	Chromatin interaction
ENSG00000124772	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs1076931	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10807169	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10947614	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10947615	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11756557	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12153820	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12202732	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12208086	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1812018	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1812019	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1812020	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2001101	0.94[EUR][1000 genomes]
rs2145048	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56144242	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61211228	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6913530	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72852338	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72852340	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7344	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7741888	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7743396	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7747264	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7755461	0.80[ASN][1000 genomes]
rs7759778	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7759933	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7760766	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7767296	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9296193	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9349001	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9357217	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9357218	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9357219	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9366907	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9366908	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9366909	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9368938	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9368939	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9368940	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9368943	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9380577	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9380578	0.84[EUR][1000 genomes]
rs9380580	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9380582	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9394359	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9394360	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9394361	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9394362	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9394363	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9394365	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885806	chr6:36349890-36621178	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	103 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36576200-36590800	Weak transcription	Right Atrium	heart
2	chr6:36577400-36595200	Weak transcription	Psoas Muscle	Psoas
3	chr6:36577800-36591000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr6:36577800-36595200	Weak transcription	Small Intestine	intestine
5	chr6:36580200-36590800	Weak transcription	NHLF	lung
6	chr6:36580200-36591000	Weak transcription	Ovary	ovary
7	chr6:36580200-36591000	Weak transcription	NH-A	brain
8	chr6:36580200-36599200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr6:36580400-36590800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr6:36580400-36591000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr6:36580400-36593000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr6:36581400-36588200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr6:36581400-36590800	Weak transcription	Primary hematopoietic stem cells	blood
14	chr6:36581400-36590800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr6:36581400-36591000	Weak transcription	Primary T cells from cord blood	blood
16	chr6:36581400-36591000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr6:36581400-36591000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
18	chr6:36581400-36591000	Weak transcription	Fetal Kidney	kidney
19	chr6:36581400-36591000	Weak transcription	Dnd41	blood
20	chr6:36581400-36604400	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr6:36581600-36589600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr6:36581600-36590400	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr6:36581600-36591000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr6:36581600-36591200	Weak transcription	Fetal Lung	lung
25	chr6:36581800-36590800	Weak transcription	Primary T cells fromperipheralblood	blood
26	chr6:36582000-36591200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr6:36582200-36595400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr6:36582800-36610800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr6:36583000-36590800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chr6:36583400-36590800	Weak transcription	Primary T helper cells fromperipheralblood	blood
31	chr6:36583600-36590800	Weak transcription	Primary T helper cells PMA-I stimulated	--
32	chr6:36583600-36591000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
33	chr6:36584600-36591400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr6:36584800-36591000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr6:36585000-36589400	Weak transcription	Brain Germinal Matrix	brain
36	chr6:36585200-36590200	Weak transcription	Adipose Nuclei	Adipose
37	chr6:36585200-36590600	Weak transcription	Colonic Mucosa	Colon
38	chr6:36585200-36590600	Weak transcription	Placenta	Placenta
39	chr6:36585200-36590800	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr6:36585200-36590800	Weak transcription	Esophagus	oesophagus
41	chr6:36585200-36591000	Weak transcription	Brain Cingulate Gyrus	brain
42	chr6:36585200-36591400	Weak transcription	Gastric	stomach
43	chr6:36585400-36590600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr6:36585400-36590600	Weak transcription	Fetal Intestine Large	intestine
45	chr6:36585400-36590800	Weak transcription	Muscle Satellite Cultured Cells	--
46	chr6:36585400-36590800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr6:36585400-36590800	Weak transcription	HSMMtube	muscle
48	chr6:36585400-36590800	Weak transcription	NHDF-Ad	bronchial
49	chr6:36585400-36591000	Weak transcription	Brain Substantia Nigra	brain
50	chr6:36585400-36591000	Weak transcription	Osteobl	bone

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