Variant report

Variant	rs56144242
Chromosome Location	chr6:36553209-36553210
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:36546247..36549201-chr6:36553046..36554863,2	K562	blood:

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10214849	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10223366	0.81[EUR][1000 genomes]
rs1076931	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10807169	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10947613	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10947614	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10947615	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11756557	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12153820	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12202732	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12208086	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12211825	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1406945	0.81[EUR][1000 genomes]
rs1812018	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1812019	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1812020	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2001101	0.85[EUR][1000 genomes]
rs2145048	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4713987	0.82[EUR][1000 genomes]
rs60627328	0.82[EUR][1000 genomes]
rs61211228	0.99[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6913530	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6937430	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72852338	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72852340	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73410251	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7344	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7738559	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7738561	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7741888	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7743396	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7747264	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7755461	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7759778	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7759933	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7760766	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7767296	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9296193	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9349001	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9357217	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9357218	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9357219	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9366907	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9366908	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9366909	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9366911	0.80[EUR][1000 genomes]
rs9368938	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9368939	0.84[EUR][1000 genomes]
rs9368940	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9368942	0.81[EUR][1000 genomes]
rs9368943	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9380577	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9380578	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9380580	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9380582	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9394359	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9394360	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9394361	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9394362	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9394363	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9394365	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885806	chr6:36349890-36621178	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	103 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36551600-36558000	Weak transcription	NHDF-Ad	bronchial
2	chr6:36551600-36559600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr6:36551600-36560000	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr6:36551600-36560600	Weak transcription	Fetal Intestine Small	intestine
5	chr6:36552000-36553800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr6:36552400-36554600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr6:36552800-36553400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr6:36552800-36553800	Enhancers	Muscle Satellite Cultured Cells	--
9	chr6:36553000-36553400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr6:36553000-36553400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr6:36553000-36553400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr6:36553000-36553400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr6:36553000-36553400	Enhancers	HSMMtube	muscle
14	chr6:36553000-36553400	Enhancers	NH-A	brain
15	chr6:36553000-36553800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr6:36553000-36553800	Enhancers	HSMM	muscle
17	chr6:36553000-36553800	Enhancers	Osteobl	bone

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links