Variant report

Variant	rs7771547
Chromosome Location	chr6:36538395-36538396
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10214849	0.81[EUR][1000 genomes]
rs10223366	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10947613	0.83[EUR][1000 genomes]
rs1406945	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4713987	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4713988	0.83[EUR][1000 genomes]
rs60627328	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs671516	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6937430	0.81[EUR][1000 genomes]
rs73410251	0.83[EUR][1000 genomes]
rs7755461	0.82[EUR][1000 genomes]
rs7759546	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9366911	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9368942	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885806	chr6:36349890-36621178	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	103 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36525800-36540200	Weak transcription	Placenta	Placenta
2	chr6:36535000-36546400	Weak transcription	Fetal Intestine Large	intestine
3	chr6:36535000-36546800	Weak transcription	Primary B cells from cord blood	blood
4	chr6:36535200-36551200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr6:36535600-36541000	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr6:36537400-36539600	Weak transcription	HepG2	liver
7	chr6:36537800-36538400	Enhancers	GM12878-XiMat	blood
8	chr6:36537800-36538600	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr6:36537800-36538800	Enhancers	Primary B cells from peripheral blood	blood
10	chr6:36538200-36538600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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