Variant report

Variant	rs7759546
Chromosome Location	chr6:36551957-36551958
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:36550929..36553081-chr6:36645589..36647335,2	K562	blood:

Variant related genes	Relation type
ENSG00000124762	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10214849	0.86[EUR][1000 genomes]
rs10223366	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10947613	0.81[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs12197590	0.81[EUR][1000 genomes]
rs1406945	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4713987	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4713988	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs60627328	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs671516	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6937430	0.87[EUR][1000 genomes]
rs73410251	0.88[EUR][1000 genomes]
rs7755461	0.83[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs7771547	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9296192	0.84[EUR][1000 genomes]
rs9366911	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9368942	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885806	chr6:36349890-36621178	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	103 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36548000-36553000	Weak transcription	HSMM	muscle
2	chr6:36548000-36553000	Weak transcription	HSMMtube	muscle
3	chr6:36548000-36553000	Weak transcription	NH-A	brain
4	chr6:36548200-36553000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr6:36550200-36552400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr6:36551200-36552000	Active TSS	iPS-15b Cell Line	embryonic stem cell
7	chr6:36551200-36552000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr6:36551200-36552200	Active TSS	ES-I3 Cell Line	embryonic stem cell
9	chr6:36551600-36552000	Enhancers	Primary T helper cells PMA-I stimulated	--
10	chr6:36551600-36552000	Enhancers	Fetal Thymus	thymus
11	chr6:36551600-36552400	Weak transcription	NHEK	skin
12	chr6:36551600-36552800	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr6:36551600-36553000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr6:36551600-36553000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr6:36551600-36553000	Weak transcription	Osteobl	bone
16	chr6:36551600-36558000	Weak transcription	NHDF-Ad	bronchial
17	chr6:36551600-36559600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
18	chr6:36551600-36560000	Weak transcription	Primary T helper cells fromperipheralblood	blood
19	chr6:36551600-36560600	Weak transcription	Fetal Intestine Small	intestine
20	chr6:36551800-36552000	Enhancers	Primary neutrophils fromperipheralblood	blood
21	chr6:36551800-36552000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr6:36551800-36552000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr6:36551800-36552000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr6:36551800-36552000	Flanking Active TSS	Placenta	Placenta
25	chr6:36551800-36552000	Enhancers	Monocytes-CD14+_RO01746	blood
26	chr6:36551800-36552200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
27	chr6:36551800-36552200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr6:36551800-36552800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr6:36551800-36553000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr6:36551800-36553000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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