Variant report

Variant	rs4713973
Chromosome Location	chr6:36382044-36382045
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:36379225..36382652-chr6:36387378..36390087,3	K562	blood:
2	chr6:36380854..36383742-chr6:36560150..36562828,2	K562	blood:
3	chr6:36381760..36383389-chr6:36410236..36412407,2	MCF-7	breast:
4	chr6:36379225..36383506-chr6:36385017..36389096,5	K562	blood:

Variant related genes	Relation type
ENSG00000179165	Chromatin interaction
ENSG00000112081	Chromatin interaction
ENSG00000112078	Chromatin interaction

Extended variants
information (count: 126 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:125)

rs_ID	r²[population]
rs1003249	0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10484615	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1061632	0.82[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap]
rs10947604	0.86[ASN][1000 genomes]
rs10947607	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10947608	0.86[ASN][1000 genomes]
rs10947614	0.89[CEU][hapmap]
rs1137628	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11755264	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs11756413	0.81[AMR][1000 genomes]
rs11757842	0.82[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs11759996	0.86[ASN][1000 genomes]
rs1191	0.91[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.84[ASN][1000 genomes]
rs12110954	0.81[AMR][1000 genomes]
rs12181938	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12190062	0.91[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes]
rs12660899	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12663882	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1358981	0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1535510	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16888552	0.82[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs16888690	0.80[AMR][1000 genomes]
rs1983781	0.91[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes]
rs1985423	0.80[AMR][1000 genomes]
rs2007741	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs2057351	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2071810	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2145751	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2146333	0.81[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2180929	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2187827	0.83[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs2234069	0.87[ASN][1000 genomes]
rs2239807	0.82[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap];0.80[AMR][1000 genomes]
rs2239808	0.91[CHB][hapmap];0.95[JPT][hapmap];0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2267927	0.80[AMR][1000 genomes]
rs2267928	0.81[AMR][1000 genomes]
rs2267929	0.80[AMR][1000 genomes]
rs2267932	0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs2300064	0.82[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs35323926	0.80[ASN][1000 genomes]
rs3752479	0.80[AMR][1000 genomes]
rs3756911	0.91[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs3756912	0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs3798472	0.91[JPT][hapmap];0.92[YRI][hapmap]
rs3798473	0.91[CHB][hapmap];0.95[JPT][hapmap];0.90[YRI][hapmap];0.81[AMR][1000 genomes]
rs3798474	0.81[AMR][1000 genomes]
rs3819760	0.87[CHB][hapmap];0.86[JPT][hapmap];0.96[YRI][hapmap]
rs4598	0.82[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4713972	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56086408	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs56763433	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs57423505	0.80[AMR][1000 genomes]
rs58093537	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs58153398	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59104483	0.80[ASN][1000 genomes]
rs59955083	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs6457920	0.91[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6457921	0.84[ASN][1000 genomes]
rs6457923	0.91[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes]
rs6457928	0.91[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap]
rs6457929	0.91[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap]
rs67018593	0.81[AMR][1000 genomes]
rs67313027	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6899372	0.91[CHB][hapmap];0.95[JPT][hapmap];0.90[YRI][hapmap]
rs6899421	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6899631	0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6901513	0.86[ASN][1000 genomes]
rs6902473	0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6905347	0.82[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6905686	0.91[CHB][hapmap];0.91[JPT][hapmap];0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6911877	0.82[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes]
rs6912117	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6912982	0.87[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap]
rs6913613	0.91[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap]
rs6913693	0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6913714	0.82[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap]
rs6917489	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6917951	0.91[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap]
rs6917981	0.87[ASN][1000 genomes]
rs6920166	0.82[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap]
rs6923337	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6926522	0.82[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6926796	0.84[ASN][1000 genomes]
rs6927896	0.82[CEU][hapmap];0.86[CHB][hapmap];0.86[JPT][hapmap];0.80[AMR][1000 genomes]
rs6928087	0.91[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs6930496	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6936942	0.91[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6941593	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73408850	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73411055	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs73413258	0.81[AMR][1000 genomes]
rs73413267	0.80[AMR][1000 genomes]
rs7344	0.87[CEU][hapmap]
rs7738604	0.81[AMR][1000 genomes]
rs7742459	0.81[JPT][hapmap]
rs7743396	0.88[CEU][hapmap]
rs7745411	0.81[AMR][1000 genomes]
rs7752714	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7754363	0.81[AMR][1000 genomes]
rs7767377	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7769765	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7771028	0.87[ASN][1000 genomes]
rs7772524	0.91[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes]
rs7772800	0.81[AMR][1000 genomes]
rs933236	0.91[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes]
rs9462185	0.85[ASN][1000 genomes]
rs9462186	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9462190	0.81[AMR][1000 genomes]
rs9462193	0.90[JPT][hapmap]
rs9470265	0.90[CHB][hapmap];0.86[JPT][hapmap]
rs9470267	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9470273	0.98[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs9470280	0.82[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs9470289	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9470291	0.84[ASN][1000 genomes]
rs9470293	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs9470294	0.91[CHB][hapmap];0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs9470295	0.91[CHB][hapmap];0.95[JPT][hapmap];0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs9470296	0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs9470297	0.91[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs9470300	0.91[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs9470302	0.91[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes]
rs9654588	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9767243	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9767778	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885806	chr6:36349890-36621178	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	103 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36382000-36382400	Enhancers	Fetal Intestine Large	intestine
2	chr6:36382000-36382600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr6:36382000-36382800	Enhancers	Fetal Intestine Small	intestine
4	chr6:36382000-36382800	Enhancers	Hela-S3	cervix
5	chr6:36382000-36382800	Enhancers	HUVEC	blood vessel
6	chr6:36382000-36383000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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