Variant report

Variant	rs9470265
Chromosome Location	chr6:36345977-36345978
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:36341854..36343386-chr6:36345415..36348354,2	K562	blood:
2	chr6:36344496..36346908-chr6:36354591..36356413,2	K562	blood:
3	chr6:36344497..36346225-chr6:36349695..36351527,2	K562	blood:

Variant related genes	Relation type
ENSG00000010030	Chromatin interaction
ENSG00000224666	Chromatin interaction

Extended variants
information (count: 59 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs1061632	0.81[JPT][hapmap]
rs1076929	0.82[GIH][hapmap]
rs10947604	0.86[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs11755264	0.81[JPT][hapmap]
rs11757842	0.81[JPT][hapmap]
rs1191	0.81[JPT][hapmap]
rs12190062	0.81[JPT][hapmap]
rs12660899	0.81[ASN][1000 genomes]
rs12663882	0.82[ASN][1000 genomes]
rs1535510	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs16888552	0.81[JPT][hapmap]
rs1983781	0.81[JPT][hapmap]
rs2007741	0.81[JPT][hapmap]
rs2057351	0.82[ASN][1000 genomes]
rs2146333	0.81[JPT][hapmap]
rs2180929	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs2187827	0.81[JPT][hapmap]
rs2234069	0.87[ASN][1000 genomes]
rs2239808	0.81[JPT][hapmap]
rs2300064	0.81[JPT][hapmap]
rs35323926	0.84[ASN][1000 genomes]
rs3756911	0.81[JPT][hapmap]
rs3798473	0.81[JPT][hapmap]
rs4598	0.81[JPT][hapmap]
rs4713973	0.90[CHB][hapmap];0.86[JPT][hapmap]
rs6457920	0.81[JPT][hapmap]
rs6457923	0.81[JPT][hapmap]
rs6457928	0.81[JPT][hapmap]
rs6457929	0.81[JPT][hapmap]
rs67313027	0.82[ASN][1000 genomes]
rs6899372	0.81[CHB][hapmap];0.81[JPT][hapmap]
rs6901513	0.89[ASN][1000 genomes]
rs6905347	0.81[JPT][hapmap]
rs6911877	0.81[JPT][hapmap]
rs6912117	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs6912982	0.81[JPT][hapmap]
rs6913613	0.81[JPT][hapmap]
rs6913714	0.81[JPT][hapmap]
rs6917489	0.81[ASN][1000 genomes]
rs6917951	0.81[JPT][hapmap]
rs6920166	0.81[JPT][hapmap]
rs6926522	0.81[JPT][hapmap]
rs6928087	0.81[JPT][hapmap]
rs6936942	0.81[JPT][hapmap]
rs6941593	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs73408850	0.82[ASN][1000 genomes]
rs7745437	0.83[ASN][1000 genomes]
rs7772524	0.81[JPT][hapmap]
rs933236	0.81[JPT][hapmap]
rs9470267	0.82[ASN][1000 genomes]
rs9470280	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs9470294	0.81[JPT][hapmap]
rs9470295	0.81[JPT][hapmap]
rs9470297	0.81[JPT][hapmap]
rs9470300	0.81[JPT][hapmap]
rs9470302	0.81[JPT][hapmap]
rs9654588	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428481	chr6:36219000-36365746	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv2762586	chr6:36344863-36348326	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9470265	ITK	trans	parietal	SCAN

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36326800-36354000	Weak transcription	Small Intestine	intestine
2	chr6:36327000-36354000	Weak transcription	Right Atrium	heart
3	chr6:36328400-36351200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr6:36328400-36353400	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr6:36328800-36353600	Weak transcription	Brain Hippocampus Middle	brain
6	chr6:36333200-36353800	Weak transcription	Pancreas	Pancrea
7	chr6:36333800-36353600	Weak transcription	Stomach Mucosa	stomach
8	chr6:36334600-36351000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr6:36337200-36348600	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr6:36339200-36354200	Weak transcription	Esophagus	oesophagus
11	chr6:36339800-36353600	Weak transcription	Lung	lung
12	chr6:36341600-36350800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr6:36341800-36350800	Weak transcription	Spleen	Spleen
14	chr6:36342000-36346400	Weak transcription	Fetal Thymus	thymus
15	chr6:36344200-36354000	Weak transcription	Duodenum Mucosa	Duodenum
16	chr6:36344600-36347200	Enhancers	Liver	Liver
17	chr6:36345000-36351000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr6:36345200-36346600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr6:36345400-36346000	Active TSS	Aorta	Aorta
20	chr6:36345400-36346000	Flanking Active TSS	GM12878-XiMat	blood
21	chr6:36345400-36351800	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr6:36345600-36347200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
23	chr6:36345600-36348200	Weak transcription	Fetal Intestine Small	intestine
24	chr6:36345600-36350400	Weak transcription	H1 Cell Line	embryonic stem cell

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