Variant report

Variant	rs9654588
Chromosome Location	chr6:36363923-36363924
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:9802769..9803667-chr6:36363146..36364143,2	NB4	blood:
2	chr6:36339204..36341007-chr6:36363394..36366216,2	K562	blood:

Extended variants
information (count: 88 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:86)

rs_ID	r²[population]
rs1061632	0.83[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap]
rs10947604	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10947607	0.81[ASN][1000 genomes]
rs10947608	0.81[ASN][1000 genomes]
rs11755264	0.91[CHB][hapmap];0.91[JPT][hapmap]
rs11757842	0.83[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs11759996	0.80[ASN][1000 genomes]
rs1191	0.91[CHB][hapmap];0.91[JPT][hapmap]
rs12181938	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12190062	0.91[CHB][hapmap];0.91[JPT][hapmap]
rs12660899	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12663882	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1358981	0.91[ASN][1000 genomes]
rs1535510	1.00[CHB][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16888552	0.83[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs1983781	0.91[CHB][hapmap];0.91[JPT][hapmap]
rs2007741	0.91[CHB][hapmap];0.91[JPT][hapmap]
rs2057351	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2145751	0.85[ASN][1000 genomes]
rs2146333	0.82[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap]
rs2180929	0.95[CHB][hapmap];0.95[JPT][hapmap];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2187827	0.83[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap]
rs2234069	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2239807	0.83[CEU][hapmap];0.86[CHB][hapmap];0.86[JPT][hapmap]
rs2239808	0.91[CHB][hapmap];0.91[JPT][hapmap]
rs2300064	0.83[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap]
rs35323926	0.85[ASN][1000 genomes]
rs3756911	0.91[CHB][hapmap];0.91[JPT][hapmap]
rs3798472	0.86[JPT][hapmap]
rs3798473	0.91[CHB][hapmap];0.91[JPT][hapmap]
rs3819760	0.87[CHB][hapmap];0.82[JPT][hapmap]
rs4598	0.83[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap]
rs4713972	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4713973	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56763433	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58093537	0.81[ASN][1000 genomes]
rs58153398	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59955083	0.92[ASN][1000 genomes]
rs6457920	0.91[CHB][hapmap];0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs6457923	0.91[CHB][hapmap];0.91[JPT][hapmap]
rs6457928	0.91[CHB][hapmap];0.91[JPT][hapmap]
rs6457929	0.91[CHB][hapmap];0.91[JPT][hapmap]
rs67313027	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6899372	0.91[CHB][hapmap];0.91[JPT][hapmap]
rs6899421	0.81[ASN][1000 genomes]
rs6901513	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6905347	0.83[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs6905686	0.91[CHB][hapmap];0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs6911877	0.83[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap]
rs6912117	0.95[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs6912982	0.87[CHB][hapmap];0.91[JPT][hapmap]
rs6913613	0.91[CHB][hapmap];0.91[JPT][hapmap]
rs6913714	0.83[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap]
rs6917489	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6917951	0.91[CHB][hapmap];0.91[JPT][hapmap]
rs6917981	0.81[ASN][1000 genomes]
rs6920166	0.83[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap]
rs6923337	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6926522	0.83[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs6927896	0.83[CEU][hapmap];0.86[CHB][hapmap];0.81[JPT][hapmap]
rs6928087	0.91[CHB][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs6930496	0.81[ASN][1000 genomes]
rs6936942	0.91[CHB][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs6941593	0.95[CHB][hapmap];0.95[JPT][hapmap];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73408850	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73411055	0.81[ASN][1000 genomes]
rs7742459	0.86[JPT][hapmap]
rs7745437	0.84[ASN][1000 genomes]
rs7752714	0.81[ASN][1000 genomes]
rs7767377	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7769765	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7771028	0.81[ASN][1000 genomes]
rs7772524	0.91[CHB][hapmap];0.91[JPT][hapmap]
rs933236	0.91[CHB][hapmap];0.91[JPT][hapmap]
rs9462186	0.81[ASN][1000 genomes]
rs9462193	0.90[JPT][hapmap]
rs9470265	0.86[CHB][hapmap];0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs9470267	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9470273	0.91[ASN][1000 genomes]
rs9470280	0.83[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs9470294	0.91[CHB][hapmap];0.87[JPT][hapmap]
rs9470295	0.91[CHB][hapmap];0.91[JPT][hapmap]
rs9470297	0.91[CHB][hapmap];0.91[JPT][hapmap]
rs9470300	0.91[CHB][hapmap];0.91[JPT][hapmap]
rs9470302	0.91[CHB][hapmap];0.91[JPT][hapmap]
rs9767243	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428481	chr6:36219000-36365746	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv885806	chr6:36349890-36621178	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	103 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36356200-36365400	Weak transcription	Gastric	stomach

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