Variant report

Variant	rs11759903
Chromosome Location	chr6:36346929-36346930
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:36346736..36349026-chr6:36352669..36354274,2	K562	blood:
2	chr6:36341854..36343386-chr6:36345415..36348354,2	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1076929	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10947604	0.82[EUR][1000 genomes]
rs11755362	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11757823	0.81[JPT][hapmap];0.86[ASN][1000 genomes]
rs13210133	0.86[ASN][1000 genomes]
rs2187810	0.82[JPT][hapmap];0.86[ASN][1000 genomes]
rs2234069	0.81[EUR][1000 genomes]
rs2234071	0.82[JPT][hapmap];0.86[ASN][1000 genomes]
rs4295471	0.82[JPT][hapmap]
rs4308555	1.00[CHB][hapmap];0.96[JPT][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4713968	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6901513	0.81[EUR][1000 genomes]
rs6919571	0.82[JPT][hapmap]
rs6928048	0.87[JPT][hapmap];0.87[ASN][1000 genomes]
rs7771459	0.83[JPT][hapmap]
rs9296180	0.82[JPT][hapmap]
rs9296181	0.83[JPT][hapmap]
rs9368931	0.83[JPT][hapmap]
rs9394349	0.83[JPT][hapmap]
rs9394350	0.81[CHB][hapmap];0.83[JPT][hapmap]
rs9470270	0.83[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428481	chr6:36219000-36365746	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv2762586	chr6:36344863-36348326	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36326800-36354000	Weak transcription	Small Intestine	intestine
2	chr6:36327000-36354000	Weak transcription	Right Atrium	heart
3	chr6:36328400-36351200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr6:36328400-36353400	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr6:36328800-36353600	Weak transcription	Brain Hippocampus Middle	brain
6	chr6:36333200-36353800	Weak transcription	Pancreas	Pancrea
7	chr6:36333800-36353600	Weak transcription	Stomach Mucosa	stomach
8	chr6:36334600-36351000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr6:36337200-36348600	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr6:36339200-36354200	Weak transcription	Esophagus	oesophagus
11	chr6:36339800-36353600	Weak transcription	Lung	lung
12	chr6:36341600-36350800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr6:36341800-36350800	Weak transcription	Spleen	Spleen
14	chr6:36344200-36354000	Weak transcription	Duodenum Mucosa	Duodenum
15	chr6:36344600-36347200	Enhancers	Liver	Liver
16	chr6:36345000-36351000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr6:36345400-36351800	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr6:36345600-36347200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
19	chr6:36345600-36348200	Weak transcription	Fetal Intestine Small	intestine
20	chr6:36345600-36350400	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr6:36346000-36350200	Weak transcription	Aorta	Aorta
22	chr6:36346800-36347000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr6:36346800-36349000	Enhancers	GM12878-XiMat	blood
24	chr6:36346800-36351000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links