Variant report
| Variant | rs2076773 |
|---|---|
| Chromosome Location | chr9:94414784-94414785 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:34)
| rs_ID | r2[population] |
|---|---|
| rs1021439 | 1.00[CHB][hapmap] |
| rs1021442 | 1.00[CHB][hapmap] |
| rs10992025 | 1.00[CHB][hapmap] |
| rs10992026 | 1.00[CHB][hapmap] |
| rs12115281 | 0.81[CEU][hapmap];0.85[TSI][hapmap];0.87[EUR][1000 genomes] |
| rs12336799 | 1.00[CHB][hapmap] |
| rs12336839 | 1.00[CHB][hapmap] |
| rs12340405 | 1.00[CHB][hapmap] |
| rs12340758 | 1.00[CHB][hapmap] |
| rs12340837 | 1.00[CHB][hapmap] |
| rs13440204 | 1.00[CHB][hapmap] |
| rs1492681 | 1.00[CHB][hapmap] |
| rs1492682 | 1.00[CHB][hapmap] |
| rs2096029 | 0.95[EUR][1000 genomes] |
| rs4743843 | 1.00[CHB][hapmap] |
| rs4743847 | 1.00[CEU][hapmap] |
| rs4743849 | 1.00[CEU][hapmap];1.00[YRI][hapmap] |
| rs4744090 | 1.00[CHB][hapmap] |
| rs4744091 | 1.00[CEU][hapmap];1.00[YRI][hapmap] |
| rs56406752 | 0.95[EUR][1000 genomes] |
| rs58073444 | 0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs58861112 | 0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61616608 | 0.95[EUR][1000 genomes] |
| rs6479368 | 1.00[CHB][hapmap] |
| rs7034655 | 1.00[CHB][hapmap] |
| rs73654016 | 0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73654017 | 0.99[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73654026 | 0.95[EUR][1000 genomes] |
| rs73654027 | 0.92[EUR][1000 genomes] |
| rs7847068 | 1.00[CHB][hapmap] |
| rs7859795 | 1.00[CHB][hapmap] |
| rs7873442 | 1.00[CHB][hapmap] |
| rs7874272 | 1.00[CHB][hapmap] |
| rs9299394 | 1.00[CHB][hapmap] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1045332 | chr9:94352661-94656016 | Active TSS Bivalent Enhancer Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv1047426 | chr9:94363211-94758114 | Weak transcription Bivalent Enhancer Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 8 gene(s) | inside rSNPs | diseases |
| 3 | nsv531631 | chr9:94373847-94633213 | Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 5 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs2076773 | OGN | cis | parietal | SCAN |
Chromatin state (count:0 , 50 per page) page:
| No data |
