Variant report
| Variant | rs4744091 |
|---|---|
| Chromosome Location | chr9:94408783-94408784 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr9:94408032..94409776-chr9:94428739..94431635,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:14)
| rs_ID | r2[population] |
|---|---|
| rs12115281 | 0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs12336799 | 1.00[CHB][hapmap] |
| rs2076773 | 1.00[CEU][hapmap];1.00[YRI][hapmap] |
| rs2096029 | 0.88[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs4743847 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs4743849 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
| rs56406752 | 0.88[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs58073444 | 0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs58861112 | 0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs61616608 | 0.88[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs73654016 | 0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs73654017 | 0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs73654026 | 0.88[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs73654027 | 0.85[EUR][1000 genomes];0.82[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1045332 | chr9:94352661-94656016 | Active TSS Bivalent Enhancer Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv1047426 | chr9:94363211-94758114 | Weak transcription Bivalent Enhancer Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 8 gene(s) | inside rSNPs | diseases |
| 3 | nsv531631 | chr9:94373847-94633213 | Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
