Variant report

Variant	rs2076907
Chromosome Location	chr4:9783428-9783429
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10939504	0.80[ASN][1000 genomes]
rs10939507	0.80[ASN][1000 genomes]
rs10939514	0.83[ASN][1000 genomes]
rs12501256	0.80[ASN][1000 genomes]
rs1878275	0.82[ASN][1000 genomes]
rs9685502	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533218	chr4:9371016-10252290	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	74 gene(s)	inside rSNPs	diseases
2	esv2754610	chr4:9372303-9804524	Enhancers Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases
3	nsv530090	chr4:9383695-10165033	Enhancers Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	70 gene(s)	inside rSNPs	diseases
4	nsv1012865	chr4:9429299-9794181	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
5	nsv1001143	chr4:9435322-9794181	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
6	nsv1012621	chr4:9456977-9802366	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
7	nsv1012634	chr4:9461218-9802366	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
8	nsv998043	chr4:9496282-9830208	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
9	nsv878667	chr4:9543673-9903121	ZNF genes & repeats Active TSS Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
10	nsv878669	chr4:9551094-9794724	Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
11	nsv999102	chr4:9633247-9794181	Enhancers Bivalent Enhancer Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
12	nsv1014216	chr4:9713612-10223836	Transcr. at gene 5' and 3' Genic enhancers Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	53 gene(s)	inside rSNPs	diseases
13	nsv1010249	chr4:9716101-10086188	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
14	nsv878671	chr4:9766888-9912101	Weak transcription Enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
15	nsv482087	chr4:9783258-9785633	Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Weak transcription Enhancers	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2076907	WDR1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:9782600-9783800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
2	chr4:9782600-9784000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
3	chr4:9782800-9783600	Active TSS	H9 Cell Line	embryonic stem cell
4	chr4:9782800-9783600	Bivalent/Poised TSS	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr4:9782800-9783800	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
6	chr4:9782800-9783800	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
7	chr4:9782800-9783800	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
8	chr4:9782800-9784000	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
9	chr4:9782800-9784000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
10	chr4:9782800-9784000	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
11	chr4:9783000-9783600	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
12	chr4:9783000-9783600	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr4:9783000-9783600	Bivalent/Poised TSS	Fetal Brain Female	brain
14	chr4:9783000-9783600	Active TSS	Right Atrium	heart
15	chr4:9783000-9783800	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr4:9783000-9783800	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr4:9783000-9783800	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr4:9783000-9784000	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr4:9783000-9784000	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
20	chr4:9783000-9784000	Bivalent Enhancer	Fetal Brain Male	brain
21	chr4:9783200-9783600	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr4:9783200-9783600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr4:9783200-9783600	Bivalent/Poised TSS	Duodenum Mucosa	Duodenum
24	chr4:9783200-9783600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
25	chr4:9783200-9783600	Bivalent Enhancer	Left Ventricle	heart
26	chr4:9783200-9783600	Flanking Bivalent TSS/Enh	Right Ventricle	heart
27	chr4:9783200-9783600	Bivalent Enhancer	HMEC	breast
28	chr4:9783400-9783600	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
29	chr4:9783400-9783600	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr4:9783400-9783600	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
31	chr4:9783400-9783600	Bivalent/Poised TSS	Colonic Mucosa	Colon
32	chr4:9783400-9783600	Bivalent Enhancer	Fetal Intestine Small	intestine
33	chr4:9783400-9783600	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
34	chr4:9783400-9783600	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
35	chr4:9783400-9783800	Flanking Bivalent TSS/Enh	ES-UCSF4 Cell Line	embryonic stem cell
36	chr4:9783400-9783800	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr4:9783400-9783800	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
38	chr4:9783400-9784200	Bivalent Enhancer	Esophagus	oesophagus

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