Variant report

Variant	rs2080222
Chromosome Location	chr7:19572851-19572852
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 93 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs1008704	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10228147	0.84[AMR][1000 genomes]
rs10230207	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10242068	0.80[AMR][1000 genomes]
rs10242663	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10244808	0.80[EUR][1000 genomes]
rs10257211	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10261496	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10261834	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10267686	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10273311	0.84[AMR][1000 genomes]
rs10276556	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10278135	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10282612	0.80[AMR][1000 genomes]
rs1074858	0.84[AMR][1000 genomes]
rs10807794	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11505420	0.89[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs1158069	0.81[AMR][1000 genomes]
rs11767221	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12535260	0.83[EUR][1000 genomes]
rs12536555	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12537939	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12538102	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12700056	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12700058	0.86[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs12700059	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13246869	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13437937	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1476944	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1985774	0.90[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs2024347	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2024355	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2058422	0.83[AMR][1000 genomes]
rs2080017	0.82[AMR][1000 genomes]
rs2109873	0.84[AMR][1000 genomes]
rs2109874	0.84[AMR][1000 genomes]
rs2160095	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2192476	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2192477	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2192481	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2192486	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2390118	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2390142	0.84[AMR][1000 genomes]
rs2390143	0.84[AMR][1000 genomes]
rs28407069	0.83[AMR][1000 genomes]
rs4236295	0.80[EUR][1000 genomes]
rs4472416	0.80[AMR][1000 genomes]
rs4472417	0.80[AMR][1000 genomes]
rs4480011	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4602789	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4626493	0.84[AMR][1000 genomes]
rs4719564	0.87[ASN][1000 genomes]
rs4719574	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4719575	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4719576	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4721778	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4721780	0.87[ASN][1000 genomes]
rs4721783	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4721784	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4721791	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4721792	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4721794	0.84[AMR][1000 genomes]
rs6461445	0.85[AMR][1000 genomes]
rs6461446	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6971038	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6971829	0.90[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs6972245	0.90[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs759249	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7786622	0.84[AMR][1000 genomes]
rs7794428	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7798205	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7802880	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7805790	0.84[AMR][1000 genomes]
rs9648259	0.82[EUR][1000 genomes]
rs9648260	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9648261	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9655174	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9655175	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs985306	0.83[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs985307	0.85[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs985881	0.86[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs985882	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv887819	chr7:19262091-19658389	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1018601	chr7:19272360-20008881	Enhancers Transcr. at gene 5' and 3' Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	24 gene(s)	inside rSNPs	diseases
3	esv2752996	chr7:19392086-19684019	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv2757219	chr7:19396146-19574066	Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	esv2759517	chr7:19396146-19620962	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	esv34500	chr7:19415543-19573763	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	esv2758107	chr7:19436043-19620962	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	esv2752153	chr7:19509002-19620651	Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	nsv887824	chr7:19524863-19687779	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
10	nsv887825	chr7:19536977-19615992	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
11	nsv1026185	chr7:19564488-19612246	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:19563400-19577400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:19570200-19573200	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr7:19571000-19575800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links