Variant report

Variant	rs2081424
Chromosome Location	chr2:56704366-56704367
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1017268	0.86[ASN][1000 genomes]
rs1017269	0.86[ASN][1000 genomes]
rs1017270	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10490407	0.92[ASN][1000 genomes]
rs10490408	0.86[ASN][1000 genomes]
rs10490409	0.86[ASN][1000 genomes]
rs11678015	0.86[ASN][1000 genomes]
rs11688894	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11903884	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12619260	0.86[ASN][1000 genomes]
rs1304897	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1304899	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1477521	0.86[ASN][1000 genomes]
rs1477522	0.86[ASN][1000 genomes]
rs17047952	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17047986	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17048063	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17048064	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17048067	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17268931	0.84[ASN][1000 genomes]
rs1978531	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2033010	0.86[ASN][1000 genomes]
rs2113863	0.86[ASN][1000 genomes]
rs2162025	0.93[ASN][1000 genomes]
rs2193484	0.89[EUR][1000 genomes]
rs2216972	0.86[ASN][1000 genomes]
rs2869827	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2869828	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4614971	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4672123	0.86[ASN][1000 genomes]
rs55788501	0.86[ASN][1000 genomes]
rs62161637	0.93[ASN][1000 genomes]
rs6706912	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs67395716	0.86[ASN][1000 genomes]
rs6753780	0.81[EUR][1000 genomes]
rs72618681	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7580218	0.86[ASN][1000 genomes]
rs7587750	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs986787	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs986788	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs987576	0.86[ASN][1000 genomes]
rs989729	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834093	chr2:56538097-56708677	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1004449	chr2:56538460-56715861	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv874171	chr2:56545845-56727178	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv874172	chr2:56638856-56811749	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv2757800	chr2:56659685-56851198	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	esv2759052	chr2:56659685-56851198	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	esv2752438	chr2:56700945-56788111	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv874173	chr2:56702495-56761626	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv874174	chr2:56702495-56761998	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv582049	chr2:56702495-56787100	Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv582050	chr2:56702495-56854346	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:56703600-56704800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr2:56703800-56704400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr2:56703800-56704400	Enhancers	NHEK	skin
4	chr2:56704000-56704400	Enhancers	Liver	Liver

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