Variant report

Variant	rs72618681
Chromosome Location	chr6:20822901-20822902
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:20820896..20823532-chr6:20833469..20836002,2	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1030092	0.81[EUR][1000 genomes]
rs11688894	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11903884	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17047952	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17047986	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2081424	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2193484	0.82[EUR][1000 genomes]
rs2869827	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2869828	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4614971	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs57501852	0.80[EUR][1000 genomes]
rs7587750	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs956157	0.81[EUR][1000 genomes]
rs986787	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs986788	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024963	chr6:20474618-20862611	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1017017	chr6:20514437-21208627	Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv538156	chr6:20514437-21208627	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:20806600-20823000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr6:20807200-20826600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr6:20807200-20856000	Weak transcription	Primary B cells from cord blood	blood
4	chr6:20807400-20848200	Weak transcription	Primary B cells from peripheral blood	blood
5	chr6:20811200-20869000	Weak transcription	Aorta	Aorta
6	chr6:20811400-20834000	Weak transcription	Brain Anterior Caudate	brain
7	chr6:20811400-20835000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr6:20811600-20824400	Weak transcription	Left Ventricle	heart
9	chr6:20812000-20824200	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr6:20812000-20824600	Weak transcription	Stomach Smooth Muscle	stomach
11	chr6:20812000-20826200	Weak transcription	Ovary	ovary
12	chr6:20812000-20827000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr6:20812000-20846200	Weak transcription	Colon Smooth Muscle	Colon
14	chr6:20814000-20824200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr6:20814800-20826200	Weak transcription	Pancreas	Pancrea
16	chr6:20815000-20824400	Weak transcription	Fetal Muscle Leg	muscle
17	chr6:20816800-20834000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr6:20817000-20827400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr6:20818200-20824600	Weak transcription	Fetal Stomach	stomach
20	chr6:20818400-20828600	Weak transcription	Fetal Kidney	kidney
21	chr6:20818400-20850800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr6:20818600-20825400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr6:20818600-20831000	Weak transcription	Brain Hippocampus Middle	brain
24	chr6:20818600-20834400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr6:20819400-20826000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr6:20819400-20830200	Weak transcription	Thymus	Thymus
27	chr6:20819600-20826000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr6:20819600-20827400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
29	chr6:20820400-20823000	Strong transcription	Primary T cells from cord blood	blood
30	chr6:20820800-20826200	Weak transcription	K562	blood
31	chr6:20821200-20825000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr6:20821200-20833800	Weak transcription	Dnd41	blood
33	chr6:20821600-20823600	Weak transcription	Primary hematopoietic stem cells	blood
34	chr6:20821800-20824800	Weak transcription	Fetal Muscle Trunk	muscle
35	chr6:20821800-20835600	Weak transcription	Primary T cells fromperipheralblood	blood
36	chr6:20822000-20833600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
37	chr6:20822000-20833800	Weak transcription	Fetal Thymus	thymus
38	chr6:20822600-20825000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr6:20822800-20825400	Weak transcription	HepG2	liver

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