Variant report

Variant	rs2081874
Chromosome Location	chr6:13543111-13543112
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs2434397	0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2434398	0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2494775	1.00[CHB][hapmap];0.94[JPT][hapmap];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2560764	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2560767	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2560769	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2560774	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2560775	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2560776	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2560777	0.80[ASN][1000 genomes]
rs2560778	0.80[ASN][1000 genomes]
rs2560780	0.80[ASN][1000 genomes]
rs2560781	0.80[ASN][1000 genomes]
rs2560784	0.82[EUR][1000 genomes]
rs2560789	0.86[CHB][hapmap];0.94[JPT][hapmap]
rs2560790	0.93[CHB][hapmap];0.94[JPT][hapmap]
rs2560805	0.93[CHB][hapmap];0.94[JPT][hapmap]
rs2841526	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2841527	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2841528	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2841532	0.81[EUR][1000 genomes]
rs2841543	0.93[CHB][hapmap];0.94[JPT][hapmap]
rs2841544	0.93[CHB][hapmap];0.94[JPT][hapmap]
rs2841569	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2841570	0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2841572	0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4340988	0.80[ASN][1000 genomes]
rs4512205	0.80[ASN][1000 genomes]
rs4715373	0.80[ASN][1000 genomes]
rs4715374	0.80[ASN][1000 genomes]
rs4715379	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs4715380	0.86[ASN][1000 genomes]
rs4715388	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61312460	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62387366	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62387367	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62387368	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62387369	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6458898	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs6923024	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6939496	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73723737	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7763316	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9370202	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9382205	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532021	chr6:13232627-13805381	Active TSS Genic enhancers Strong transcription Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv1033620	chr6:13419730-13571788	Weak transcription Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13536400-13543600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:13538000-13544800	Weak transcription	Liver	Liver
3	chr6:13539400-13545800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links