Variant report
| Variant | rs9370202 |
|---|---|
| Chromosome Location | chr6:13543029-13543030 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:38)
| rs_ID | r2[population] |
|---|---|
| rs2081874 | 0.84[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2434397 | 0.99[ASN][1000 genomes] |
| rs2434398 | 0.99[ASN][1000 genomes] |
| rs2494775 | 0.88[ASN][1000 genomes] |
| rs2560764 | 0.87[ASN][1000 genomes] |
| rs2560767 | 0.90[ASN][1000 genomes] |
| rs2560769 | 0.82[ASN][1000 genomes] |
| rs2560774 | 0.87[ASN][1000 genomes] |
| rs2560775 | 0.87[ASN][1000 genomes] |
| rs2560776 | 0.87[ASN][1000 genomes] |
| rs2560777 | 0.80[ASN][1000 genomes] |
| rs2560778 | 0.80[ASN][1000 genomes] |
| rs2560780 | 0.80[ASN][1000 genomes] |
| rs2560781 | 0.80[ASN][1000 genomes] |
| rs2841526 | 0.87[ASN][1000 genomes] |
| rs2841527 | 0.87[ASN][1000 genomes] |
| rs2841528 | 0.87[ASN][1000 genomes] |
| rs2841569 | 1.00[ASN][1000 genomes] |
| rs2841570 | 0.98[ASN][1000 genomes] |
| rs2841572 | 0.99[ASN][1000 genomes] |
| rs4340988 | 0.80[ASN][1000 genomes] |
| rs4512205 | 0.80[ASN][1000 genomes] |
| rs4715373 | 0.80[ASN][1000 genomes] |
| rs4715374 | 0.80[ASN][1000 genomes] |
| rs4715379 | 0.86[ASN][1000 genomes] |
| rs4715380 | 0.86[ASN][1000 genomes] |
| rs4715388 | 0.94[ASN][1000 genomes] |
| rs61312460 | 1.00[ASN][1000 genomes] |
| rs62387366 | 0.99[ASN][1000 genomes] |
| rs62387367 | 0.83[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62387368 | 0.83[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62387369 | 0.84[AMR][1000 genomes];0.99[ASN][1000 genomes] |
| rs6458898 | 0.84[ASN][1000 genomes] |
| rs6923024 | 0.88[ASN][1000 genomes] |
| rs6939496 | 0.88[ASN][1000 genomes] |
| rs73723737 | 0.83[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7763316 | 0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9382205 | 0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv532021 | chr6:13232627-13805381 | Active TSS Genic enhancers Strong transcription Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 74 gene(s) | inside rSNPs | diseases |
| 2 | nsv1033620 | chr6:13419730-13571788 | Weak transcription Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:13536400-13543600 | Weak transcription | ES-UCSF4 Cell Line | embryonic stem cell |
| 2 | chr6:13538000-13544800 | Weak transcription | Liver | Liver |
| 3 | chr6:13539400-13545800 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
