Variant report

Variant	rs2560764
Chromosome Location	chr6:13548691-13548692
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:13548690..13551491-chr6:13574018..13576590,2	K562	blood:
2	chr6:13487174..13489688-chr6:13548190..13550708,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000145990	Chromatin interaction
ENSG00000124523	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs2081874	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2434397	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2434398	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2494775	0.92[EUR][1000 genomes]
rs2560767	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2560769	0.90[EUR][1000 genomes]
rs2560774	0.92[EUR][1000 genomes]
rs2560775	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2560776	0.89[EUR][1000 genomes]
rs2560784	0.86[EUR][1000 genomes]
rs2560787	0.84[EUR][1000 genomes]
rs2560791	0.83[EUR][1000 genomes]
rs2841504	0.84[EUR][1000 genomes]
rs2841526	0.90[EUR][1000 genomes]
rs2841527	0.90[EUR][1000 genomes]
rs2841528	0.90[EUR][1000 genomes]
rs2841532	0.85[EUR][1000 genomes]
rs2841569	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2841570	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2841572	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4715388	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61312460	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62387366	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62387367	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62387368	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62387369	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6923024	0.90[EUR][1000 genomes]
rs6939496	0.90[EUR][1000 genomes]
rs73723737	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7763316	0.87[ASN][1000 genomes]
rs9370202	0.87[ASN][1000 genomes]
rs9382170	0.84[EUR][1000 genomes]
rs9382205	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532021	chr6:13232627-13805381	Active TSS Genic enhancers Strong transcription Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv1033620	chr6:13419730-13571788	Weak transcription Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13544800-13555200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:13545200-13548800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr6:13545200-13555000	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr6:13545400-13548800	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr6:13545400-13548800	Weak transcription	HepG2	liver
6	chr6:13545400-13549200	Weak transcription	Liver	Liver
7	chr6:13547000-13548800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr6:13547200-13554600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr6:13547600-13549800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr6:13548600-13549600	Enhancers	Primary B cells from peripheral blood	blood

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