Variant report

Variant	rs2086166
Chromosome Location	chr15:39754561-39754562
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11070204	1.00[CEU][hapmap];0.89[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1158918	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11631986	0.84[YRI][hapmap]
rs11633970	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11857561	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12438465	1.00[CEU][hapmap];0.89[CHB][hapmap];0.89[JPT][hapmap];0.93[YRI][hapmap];0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12593294	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12899217	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1812583	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1947782	0.85[ASN][1000 genomes]
rs1993892	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1993893	0.96[ASN][1000 genomes]
rs2127029	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2411293	1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34329697	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4244571	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4486853	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4533261	0.80[YRI][hapmap]
rs4924361	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4924363	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59431794	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs60697424	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6492888	1.00[CEU][hapmap];0.89[JPT][hapmap];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7171244	0.93[CEU][hapmap];0.89[CHB][hapmap];0.89[JPT][hapmap];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7178351	1.00[CEU][hapmap];0.89[JPT][hapmap];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7180041	1.00[CEU][hapmap];0.89[JPT][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7350779	1.00[CEU][hapmap];0.89[JPT][hapmap];0.82[YRI][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs74008200	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs74010438	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8030260	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8032900	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs8033214	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8040790	0.84[YRI][hapmap]
rs9888722	1.00[CEU][hapmap];0.89[CHB][hapmap];0.89[JPT][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9920539	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049682	chr15:39657279-40027403	Enhancers Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv542361	chr15:39657279-40027403	Weak transcription Strong transcription Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv1042824	chr15:39676039-39757222	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv542362	chr15:39676039-39757222	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	esv3373125	chr15:39691567-40061262	Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
6	nsv904094	chr15:39738006-39976057	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:39740000-39759400	Weak transcription	Stomach Smooth Muscle	stomach
2	chr15:39752800-39755200	Enhancers	Fetal Muscle Leg	muscle
3	chr15:39753000-39755600	Enhancers	NHDF-Ad	bronchial
4	chr15:39753200-39754600	Enhancers	Ovary	ovary
5	chr15:39753200-39754600	Enhancers	Skeletal Muscle Female	skeletal muscle
6	chr15:39753200-39755200	Enhancers	Adipose Nuclei	Adipose
7	chr15:39753200-39755400	Enhancers	Fetal Stomach	stomach
8	chr15:39753400-39754800	Enhancers	Rectal Smooth Muscle	rectum
9	chr15:39753400-39755200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr15:39753400-39755200	Enhancers	Left Ventricle	heart
11	chr15:39753400-39755200	Enhancers	Right Atrium	heart
12	chr15:39753400-39755200	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr15:39753400-39756000	Enhancers	HUVEC	blood vessel
14	chr15:39753600-39754800	Enhancers	Colon Smooth Muscle	Colon
15	chr15:39753600-39755600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr15:39753600-39755800	Enhancers	Muscle Satellite Cultured Cells	--
17	chr15:39753600-39755800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr15:39753600-39755800	Enhancers	Osteobl	bone
19	chr15:39753600-39758000	Weak transcription	K562	blood
20	chr15:39753600-39765200	Weak transcription	Pancreas	Pancrea
21	chr15:39753800-39754600	Enhancers	Fetal Heart	heart
22	chr15:39753800-39755400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr15:39754000-39754600	Enhancers	Spleen	Spleen
24	chr15:39754000-39754800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr15:39754000-39755200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr15:39754000-39756000	Enhancers	NHLF	lung
27	chr15:39754200-39755200	Weak transcription	HSMM	muscle
28	chr15:39754200-39758000	Weak transcription	Fetal Lung	lung
29	chr15:39754200-39758000	Weak transcription	Fetal Muscle Trunk	muscle
30	chr15:39754400-39755000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr15:39754400-39755200	Enhancers	NH-A	brain
32	chr15:39754400-39758000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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