Variant report

Variant	rs4924361
Chromosome Location	chr15:39781789-39781790
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11070204	1.00[CEU][hapmap];0.89[JPT][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1158918	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11633970	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11857561	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12438465	1.00[CEU][hapmap];0.89[JPT][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12593294	1.00[CEU][hapmap];0.89[JPT][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12899217	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1812583	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1947782	0.91[ASN][1000 genomes]
rs1993892	0.91[ASN][1000 genomes]
rs1993893	0.87[ASN][1000 genomes]
rs2086166	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2127029	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2411293	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34329697	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4244571	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4486853	0.89[EUR][1000 genomes]
rs4924363	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59431794	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60697424	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6492888	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7171244	0.93[CEU][hapmap];0.89[JPT][hapmap];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7178351	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7180041	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7350779	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs74008200	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs74010438	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8030260	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8032900	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs8033214	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9888722	1.00[CEU][hapmap];0.89[JPT][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9920539	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049682	chr15:39657279-40027403	Enhancers Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv542361	chr15:39657279-40027403	Weak transcription Strong transcription Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	esv3373125	chr15:39691567-40061262	Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	nsv904094	chr15:39738006-39976057	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:39777800-39783000	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr15:39778000-39783000	Enhancers	Fetal Lung	lung
3	chr15:39778400-39785200	Enhancers	Fetal Stomach	stomach
4	chr15:39778800-39782800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr15:39778800-39788000	Weak transcription	HSMMtube	muscle
6	chr15:39779000-39781800	Enhancers	Ovary	ovary
7	chr15:39779200-39784000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr15:39779400-39788000	Weak transcription	NHLF	lung
9	chr15:39780200-39786000	Enhancers	Fetal Heart	heart
10	chr15:39780400-39782400	Weak transcription	Left Ventricle	heart
11	chr15:39780800-39782800	Enhancers	Stomach Smooth Muscle	stomach
12	chr15:39780800-39785000	Enhancers	Colon Smooth Muscle	Colon
13	chr15:39780800-39786600	Enhancers	Rectal Smooth Muscle	rectum
14	chr15:39780800-39787800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr15:39781000-39788200	Weak transcription	Right Ventricle	heart
16	chr15:39781400-39788000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr15:39781400-39788000	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr15:39781400-39788200	Weak transcription	Fetal Muscle Leg	muscle
19	chr15:39781400-39792200	Weak transcription	Right Atrium	heart
20	chr15:39781600-39782000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr15:39781600-39782200	Enhancers	Fetal Kidney	kidney

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