Variant report

Variant	rs60697424
Chromosome Location	chr15:39778525-39778526
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11070204	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1158918	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11633970	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11857561	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12438465	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12593294	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12899217	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1812583	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1947782	0.91[ASN][1000 genomes]
rs1993892	0.91[ASN][1000 genomes]
rs1993893	0.87[ASN][1000 genomes]
rs2086166	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2127029	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2411293	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34329697	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4244571	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4486853	0.91[EUR][1000 genomes]
rs4924361	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4924363	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59431794	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6492888	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7171244	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7178351	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7180041	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7350779	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs74008200	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs74010438	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8030260	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8032900	0.94[ASN][1000 genomes]
rs8033214	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9888722	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9920539	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049682	chr15:39657279-40027403	Enhancers Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv542361	chr15:39657279-40027403	Weak transcription Strong transcription Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	esv3373125	chr15:39691567-40061262	Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	nsv904094	chr15:39738006-39976057	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:39777800-39783000	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr15:39778000-39778600	Weak transcription	Fetal Kidney	kidney
3	chr15:39778000-39783000	Enhancers	Fetal Lung	lung
4	chr15:39778200-39780200	Enhancers	Rectal Smooth Muscle	rectum
5	chr15:39778200-39780400	Enhancers	Colon Smooth Muscle	Colon
6	chr15:39778400-39778800	Enhancers	HSMMtube	muscle
7	chr15:39778400-39780200	Enhancers	Stomach Smooth Muscle	stomach
8	chr15:39778400-39781600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr15:39778400-39785200	Enhancers	Fetal Stomach	stomach

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